| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,661,043 – 4,661,130 |
| Length | 87 |
| Max. P | 0.984910 |
| Location | 4,661,043 – 4,661,130 |
|---|---|
| Length | 87 |
| Sequences | 12 |
| Columns | 87 |
| Reading direction | forward |
| Mean pairwise identity | 97.25 |
| Shannon entropy | 0.05709 |
| G+C content | 0.34004 |
| Mean single sequence MFE | -16.14 |
| Consensus MFE | -15.47 |
| Energy contribution | -15.38 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.47 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.18 |
| SVM RNA-class probability | 0.984910 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4661043 87 + 22422827 AUCGUUUGCCCCUGAGAAUCAAAGUCUCGAUUCUCGUAAAAAUGAUUCAUGAUAUCGCAUUAUUUCCGUAUCAUUUGUAAUUUCCAG (((((((.....((((((((........))))))))...)))))))..(((((((.(........).)))))))............. ( -15.80, z-score = -2.31, R) >droGri2.scaffold_15203 2077911 87 - 11997470 AUCAUUUGCCCAAUAGUAUCAAAGUCUCGAUUCUCAUAGAAAUGAUUCAUGAUAUCGCAUUAUUUCCGUAUCAUUUGUAAUUUCCAG .....((((..(((.((((..((((..((((..((((.(((....))))))).))))....))))..)))).))).))))....... ( -7.60, z-score = 0.59, R) >droMoj3.scaffold_6473 8543284 87 + 16943266 AUCAUUUGCCCAUGAGAAUCAAAGUCUCGAUUCUCAUAAAAAUGAUUCAUGAUAUCGCAUUAUUUCCGUAUCAUUUGUAAUUUCCAG (((((((....(((((((((........)))))))))..)))))))..(((((((.(........).)))))))............. ( -18.30, z-score = -3.36, R) >droVir3.scaffold_12970 4005233 87 + 11907090 AUCAUUUGCCCAUGAGAAUCAAAGUCUCGAUUCUCAUAAAAAUGAUUCAUGAUAUCGCAUUAUUUCCGUAUCAUUUGUAAUUUCCAG (((((((....(((((((((........)))))))))..)))))))..(((((((.(........).)))))))............. ( -18.30, z-score = -3.36, R) >droWil1.scaffold_181096 4382755 87 + 12416693 AUCAUUUGCCCAUGAGAAUCAAAGUCUCGAUUCUCGUAAAAAUGAUUCAUGAUAUCGCAUUAUUUCCGUAUCAUUUGUAAUUUCCAG (((((((....(((((((((........)))))))))..)))))))..(((((((.(........).)))))))............. ( -17.90, z-score = -3.06, R) >droSim1.chrX 3610831 87 + 17042790 AUCGUUUGCCCCUGAGAAUCAAAGUCUCGAUUCUCGUAAAAAUGAUUCAUGAUAUCGCAUUAUUUCCGUAUCAUUUGUAAUUUCCAG (((((((.....((((((((........))))))))...)))))))..(((((((.(........).)))))))............. ( -15.80, z-score = -2.31, R) >droSec1.super_4 4103348 87 - 6179234 AUCGUUAGCCCCUGAGAAUCAAAGUCUCGAUUCUCGUAAAAAUGAUUCAUGAUAUCGCAUUAUUUCCGUAUCAUUUGUAAUUUCCAG .............(((((((........)))))))....(((((((....((((......)))).....)))))))........... ( -14.40, z-score = -1.86, R) >droYak2.chrX 17987192 87 - 21770863 AUCGUUUGCCCCUGAGAAUCAAAGUCUCGAUUCUCAUAAAAAUGAUUCAUGAUAUCGCAUUAUUUCCGUAUCAUUUGUAAUUUCCAG (((((((.....((((((((........))))))))...)))))))..(((((((.(........).)))))))............. ( -16.50, z-score = -2.78, R) >droEre2.scaffold_4690 2036383 87 + 18748788 AUCGUUUGCCCCUGAGAAUCAAAGUCUCGAUUCUCGUAAAAAUGAUUCAUGAUAUCGCAUUAUUUCCGUAUCAUUUGUAAUUUCCAG (((((((.....((((((((........))))))))...)))))))..(((((((.(........).)))))))............. ( -15.80, z-score = -2.31, R) >droAna3.scaffold_13417 6923540 87 - 6960332 AUCGUUUGCCCAUGAGAAUCAAAGUCUCGAUUCUCGUAAAAAUGAUUCAUGAUAUCGCAUUAUUUCCGUAUCAUUUGUAAUUUCCAG (((((((....(((((((((........)))))))))..)))))))..(((((((.(........).)))))))............. ( -17.50, z-score = -2.72, R) >dp4.chrXL_group1a 2038712 87 - 9151740 AUCAUUUGCCCAUGAGAAUCAAAGUCUCGAUUCUCGUAAAAAUGAUUCAUGAUAUCGCAUUAUUUCCGUAUCAUUUGUAAUUUCCAG (((((((....(((((((((........)))))))))..)))))))..(((((((.(........).)))))))............. ( -17.90, z-score = -3.06, R) >droPer1.super_13 573272 87 - 2293547 AUCAUUUGCCCAUGAGAAUCAAAGUCUCGAUUCUCGUAAAAAUGAUUCAUGAUAUCGCAUUAUUUCCGUAUCAUUUGUAAUUUCCAG (((((((....(((((((((........)))))))))..)))))))..(((((((.(........).)))))))............. ( -17.90, z-score = -3.06, R) >consensus AUCAUUUGCCCAUGAGAAUCAAAGUCUCGAUUCUCGUAAAAAUGAUUCAUGAUAUCGCAUUAUUUCCGUAUCAUUUGUAAUUUCCAG (((((((.....((((((((........))))))))...)))))))..(((((((.(........).)))))))............. (-15.47 = -15.38 + -0.08)
| Location | 4,661,043 – 4,661,130 |
|---|---|
| Length | 87 |
| Sequences | 12 |
| Columns | 87 |
| Reading direction | reverse |
| Mean pairwise identity | 97.25 |
| Shannon entropy | 0.05709 |
| G+C content | 0.34004 |
| Mean single sequence MFE | -18.30 |
| Consensus MFE | -17.11 |
| Energy contribution | -17.20 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.913668 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4661043 87 - 22422827 CUGGAAAUUACAAAUGAUACGGAAAUAAUGCGAUAUCAUGAAUCAUUUUUACGAGAAUCGAGACUUUGAUUCUCAGGGGCAAACGAU .(((((((.....((((((((.(.....).)).)))))).....))))))).(((((((((....)))))))))............. ( -17.70, z-score = -1.86, R) >droGri2.scaffold_15203 2077911 87 + 11997470 CUGGAAAUUACAAAUGAUACGGAAAUAAUGCGAUAUCAUGAAUCAUUUCUAUGAGAAUCGAGACUUUGAUACUAUUGGGCAAAUGAU .............((((((((.(.....).)).))))))..(((((((((...((.(((((....))))).))....)).))))))) ( -13.50, z-score = -0.63, R) >droMoj3.scaffold_6473 8543284 87 - 16943266 CUGGAAAUUACAAAUGAUACGGAAAUAAUGCGAUAUCAUGAAUCAUUUUUAUGAGAAUCGAGACUUUGAUUCUCAUGGGCAAAUGAU .............((((((((.(.....).)).))))))..((((((((((((((((((((....)))))))))))))..))))))) ( -22.40, z-score = -3.22, R) >droVir3.scaffold_12970 4005233 87 - 11907090 CUGGAAAUUACAAAUGAUACGGAAAUAAUGCGAUAUCAUGAAUCAUUUUUAUGAGAAUCGAGACUUUGAUUCUCAUGGGCAAAUGAU .............((((((((.(.....).)).))))))..((((((((((((((((((((....)))))))))))))..))))))) ( -22.40, z-score = -3.22, R) >droWil1.scaffold_181096 4382755 87 - 12416693 CUGGAAAUUACAAAUGAUACGGAAAUAAUGCGAUAUCAUGAAUCAUUUUUACGAGAAUCGAGACUUUGAUUCUCAUGGGCAAAUGAU .............((((((((.(.....).)).))))))..((((((((((.(((((((((....))))))))).)))..))))))) ( -18.10, z-score = -1.79, R) >droSim1.chrX 3610831 87 - 17042790 CUGGAAAUUACAAAUGAUACGGAAAUAAUGCGAUAUCAUGAAUCAUUUUUACGAGAAUCGAGACUUUGAUUCUCAGGGGCAAACGAU .(((((((.....((((((((.(.....).)).)))))).....))))))).(((((((((....)))))))))............. ( -17.70, z-score = -1.86, R) >droSec1.super_4 4103348 87 + 6179234 CUGGAAAUUACAAAUGAUACGGAAAUAAUGCGAUAUCAUGAAUCAUUUUUACGAGAAUCGAGACUUUGAUUCUCAGGGGCUAACGAU .(((((((.....((((((((.(.....).)).)))))).....))))))).(((((((((....)))))))))............. ( -17.70, z-score = -1.82, R) >droYak2.chrX 17987192 87 + 21770863 CUGGAAAUUACAAAUGAUACGGAAAUAAUGCGAUAUCAUGAAUCAUUUUUAUGAGAAUCGAGACUUUGAUUCUCAGGGGCAAACGAU .(((((((.....((((((((.(.....).)).)))))).....)))))))((((((((((....))))))))))............ ( -18.50, z-score = -2.02, R) >droEre2.scaffold_4690 2036383 87 - 18748788 CUGGAAAUUACAAAUGAUACGGAAAUAAUGCGAUAUCAUGAAUCAUUUUUACGAGAAUCGAGACUUUGAUUCUCAGGGGCAAACGAU .(((((((.....((((((((.(.....).)).)))))).....))))))).(((((((((....)))))))))............. ( -17.70, z-score = -1.86, R) >droAna3.scaffold_13417 6923540 87 + 6960332 CUGGAAAUUACAAAUGAUACGGAAAUAAUGCGAUAUCAUGAAUCAUUUUUACGAGAAUCGAGACUUUGAUUCUCAUGGGCAAACGAU .(((((((.....((((((((.(.....).)).)))))).....))))))).(((((((((....)))))))))............. ( -17.70, z-score = -1.78, R) >dp4.chrXL_group1a 2038712 87 + 9151740 CUGGAAAUUACAAAUGAUACGGAAAUAAUGCGAUAUCAUGAAUCAUUUUUACGAGAAUCGAGACUUUGAUUCUCAUGGGCAAAUGAU .............((((((((.(.....).)).))))))..((((((((((.(((((((((....))))))))).)))..))))))) ( -18.10, z-score = -1.79, R) >droPer1.super_13 573272 87 + 2293547 CUGGAAAUUACAAAUGAUACGGAAAUAAUGCGAUAUCAUGAAUCAUUUUUACGAGAAUCGAGACUUUGAUUCUCAUGGGCAAAUGAU .............((((((((.(.....).)).))))))..((((((((((.(((((((((....))))))))).)))..))))))) ( -18.10, z-score = -1.79, R) >consensus CUGGAAAUUACAAAUGAUACGGAAAUAAUGCGAUAUCAUGAAUCAUUUUUACGAGAAUCGAGACUUUGAUUCUCAUGGGCAAACGAU .(((((((.....((((((((.(.....).)).)))))).....))))))).(((((((((....)))))))))............. (-17.11 = -17.20 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:15:28 2011