| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,643,470 – 4,643,574 |
| Length | 104 |
| Max. P | 0.990874 |
| Location | 4,643,470 – 4,643,574 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 70.97 |
| Shannon entropy | 0.49447 |
| G+C content | 0.51883 |
| Mean single sequence MFE | -38.22 |
| Consensus MFE | -19.23 |
| Energy contribution | -18.80 |
| Covariance contribution | -0.43 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.57 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.44 |
| SVM RNA-class probability | 0.990874 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4643470 104 + 22422827 -UCGGGCAUGGAAGCGGGCC--AAAUCAGUUAAUUGAUGUUGAAAUCGGGCGAAAGUCCUUGGCCCAAAACGGCCGGACGGCCAAAUGGCCCUUCAAUGCUUCUUGC-------- -....(((.(((((((((((--(((((((....))))).........((((....))))))))))).........(((.((((....)))).)))...)))))))))-------- ( -44.10, z-score = -3.01, R) >droSim1.chrX 3583810 86 + 17042790 -UCGGGC-UGGAAGCGGGCC--AAAUCAGUUAAUUGAUGUUGAAAUCGGGCGAAAGUCCUUGGC-----------------CCAAACGGCCCUUCAAUGCUUCUUGC-------- -..((((-((.....(((((--(((((((....))))).........((((....)))))))))-----------------))...))))))...............-------- ( -34.70, z-score = -2.89, R) >droYak2.chrX 17968026 99 - 21770863 -UCGUGGCUGGAAGCGGGCC--AAAUCAGUUAAUUGAUGUUGAAAUCGGGCGAAAGUCCUUGGCCCAAA-----CGGCCGGCCAAAUGGCCCUUCAAUGCUACUUGC-------- -..(((((..((((.(((((--(((((((....))))).........((((....)))))))))))...-----.(((((......)))))))))...)))))....-------- ( -43.10, z-score = -3.64, R) >droEre2.scaffold_4690 2019006 100 + 18748788 UUGGAAGCUGGAAGCGGGCC--AAAUCAGUUAAUUGAUGUUGAAAUCGGGCGAAAGUCCUUGGCCCAAA-----CGGCCGGCCAAAUGGCCCUUCAAUGGUUCUUGC-------- ..((((.(..((((.(((((--(((((((....))))).........((((....)))))))))))...-----.(((((......)))))))))...).))))...-------- ( -39.10, z-score = -2.31, R) >droAna3.scaffold_12929 3229137 109 + 3277472 -UCGGCUUGGCAAACAAACCGAAAAUCAGUUAAUUGAUGUUCAAAUCGAGAGAGUUCCCCUGUAUCGGG-----CAGUCAAAUGCCCGGGCUCUUAACUCGGCUUACAAGGACCA -((((.(((.....))).))))..(((((....)))))((((((..(((((((((.........(((((-----((......))))))))))))...))))..))....)))).. ( -30.10, z-score = -1.00, R) >consensus _UCGGGCCUGGAAGCGGGCC__AAAUCAGUUAAUUGAUGUUGAAAUCGGGCGAAAGUCCUUGGCCCAAA_____CGGCCGGCCAAAUGGCCCUUCAAUGCUUCUUGC________ ...............(((((....(((((....))))).........((((....))))((((((..............))))))..)))))....................... (-19.23 = -18.80 + -0.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:15:26 2011