| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,639,426 – 4,639,587 |
| Length | 161 |
| Max. P | 0.964172 |
| Location | 4,639,426 – 4,639,587 |
|---|---|
| Length | 161 |
| Sequences | 8 |
| Columns | 169 |
| Reading direction | reverse |
| Mean pairwise identity | 76.85 |
| Shannon entropy | 0.47037 |
| G+C content | 0.50306 |
| Mean single sequence MFE | -35.81 |
| Consensus MFE | -23.49 |
| Energy contribution | -23.36 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.73 |
| SVM RNA-class probability | 0.964172 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4639426 161 - 22422827 --GACAGAAAUCAAAAGAACAUUGGCCACAGGCCCAUUUCCA-CAACCACCCACCAAC--CCCCCCCCUCCAACCCCGGGGACACAUUUUGUGCGAUAAUUAUCGAUGUCCUGCCGUCAAAGACAAGCAUAGAAUGAAG-CCCAAAAUGACGGCGACCCCC--AAUUCC --....(((.......(((.((.((((...)))).)))))..-...............--.................((((...(((((((((((((....)))((((......))))........))))))))))..(-((.........)))...))))--..))). ( -33.80, z-score = -1.70, R) >droPer1.super_13 1660290 159 - 2293547 GACAGAGAAAUCAAAAGAGCUUUGGCCACAGGCCCAUUGCGGAUGCCGUGUCGGC-----AUCGGCCUUCGGCCCUCCAGGACACAUUUUGUACGAUAAUUAUCGAUGUCCUUCCGUCACAGACAAGCACAAAAUGAAA-CCUAAAAUGAUGACACCCC----AAUUUC ......(..((((...(((....((((..((((((.....)(((((((...))))-----))))))))..))))))).(((...((((((((.((((....)))).((((...........))))...))))))))...-)))....))))..).....----...... ( -42.80, z-score = -1.60, R) >dp4.chrXL_group1a 7054436 159 - 9151740 GACAGAGAAAUCAAAAGAGCUUUGGCCACUGGCCCAUUGCGGAUGCCGUGUCGGC-----AUCGGCCGUCGGCCCUCCAGGACACAUUUUGUACGAUAAUUAUCGAUGUCCUUCCGUCACAGACAAGCACAAAAUGAAA-CCUUAAAUGAUGACACCCC----AAUUUC ..(((((...((....)).)))))......((((.((.((.(((((((...))))-----))).)).)).))))....(((...((((((((.((((....)))).((((...........))))...))))))))...-)))................----...... ( -42.30, z-score = -1.03, R) >droAna3.scaffold_12929 3225328 130 - 3277472 -GUGGAGAAAUCAAAAGAACAUUGGCCACAGGCCC---------------------------------UCAACCCCACAGGACACAUUUCGUGCGAUAAUUAUCGAUGUCCUCCCGUCAAAGACAAGCACAAAAUGAAG-CCUAAAAUGAUGACACCCC----AAUUUU -(((((....)).......((((((((...)))).---------------------------------..........(((...(((((.(((((((....)))((((......))))........)))).)))))...-))).....)))).)))...----...... ( -28.00, z-score = -1.64, R) >droEre2.scaffold_4690 2014797 152 - 18748788 --GACAGAAAUCAAAAGAACAUUGGCCACAGGCCCAUUUU----------CCGCCCCC--CCUUCCGCCCCAA-CCCGGGGACACAUUUUGUGCGAUAAUUAUCGAUGUCCGCCCGUCAAAGACAAGCACAGAAUGAAGCCCCAAAAUGACGGCGACCCCC--AAUUUC --....(((((.....(((.((.((((...)))).)).))----------).......--.....((((.((.-...((((...(((((((((((((....)))((((......))))........))))))))))...))))....))..))))......--.))))) ( -40.40, z-score = -2.85, R) >droYak2.chrX 17963867 162 + 21770863 --GACAGAAAUCAAAAGAACAUUGGCCACAGGCCCAUUUCU----CCCACUUUCCCCCCUCUCCCCUCUUCCACCCCUGGGACACAUUUUGUGCGAUAAUUAUCGAUGUCCGCCCGUUAAAGACAAGCCCACAAUAUAG-CCCAAAAUGACGGCGACCCCCUGAAUUUC --..(((.........(((.((.((((...)))).)))))(----(((...............(((............)))...(((((((.(((((....)))..(((..((..(((...)))..))..))).....)-).)))))))..)).))....)))...... ( -26.80, z-score = 0.25, R) >droSec1.super_4 4081617 164 + 6179234 --GACAGAAAUCAAAAGAACAUUGGCCACAGGCCCAUUUCCACCUACAACCCACCCCCUACCCCCCCUUCAACCCCCGGGGACACAUUUUGUGCGAUAAUUAUCGAUGUCCUCCCGUCAAAGACAAGCACAGAAUGAAG-CCCAAAAUGACGGCGACCCCC--AAUUUC --....(((((.....(((.((.((((...)))).))))).....................................((((...(((((((((((((....)))((((......))))........))))))))))..(-((.........)))...))))--.))))) ( -36.20, z-score = -2.62, R) >droSim1.chrX_random 1654933 164 - 5698898 --GACAGAAAUCAAAAGAACAUUGGCCACAGGCCCAUUUCCACCCCCACACCACCCCCUUACCCCCCUUCAACCCCCGGGGACACAUUUUGUGCGAUAAUUAUCGAUGUCCUCCCGUCAAAGACAAGCACAGAAUGAAG-CCCAAAAUGACGGCGACCCCC--AAUUUC --....(((((.....(((.((.((((...)))).))))).....................................((((...(((((((((((((....)))((((......))))........))))))))))..(-((.........)))...))))--.))))) ( -36.20, z-score = -2.55, R) >consensus __GACAGAAAUCAAAAGAACAUUGGCCACAGGCCCAUUUCC____CC_ACCCACCCCC__CCCCCCCCUCAACCCCCGGGGACACAUUUUGUGCGAUAAUUAUCGAUGUCCUCCCGUCAAAGACAAGCACAGAAUGAAG_CCCAAAAUGACGGCGACCCCC__AAUUUC ..........(((..........((((...))))............................................(((...(((((((((((((....)))((((......))))........))))))))))....)))....)))................... (-23.49 = -23.36 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:15:26 2011