| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,112,381 – 10,112,480 |
| Length | 99 |
| Max. P | 0.520033 |
| Location | 10,112,381 – 10,112,480 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 80.19 |
| Shannon entropy | 0.33351 |
| G+C content | 0.53652 |
| Mean single sequence MFE | -27.59 |
| Consensus MFE | -17.51 |
| Energy contribution | -18.10 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.520033 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10112381 99 + 23011544 GGGUCCAUUCGGAUGCUUUGUUGUUGGCCAAGGCCAGUCAAGUGGCUCUGUCCAGACGCCACUCUCCAUCUGAAUCGCU----CCAUCUUCAUUUCCAUCUCC------ ((..(.(((((((((.....((((((((....))))).)))((((((((....))).)))))....))))))))).)..----))..................------ ( -33.70, z-score = -3.39, R) >droSim1.chr2L 9903519 97 + 22036055 GGGUCCAUUCUGAUGCUUUGUUGUUGGCCAUGGCCAGUCAAGUGGCUCUGUCCAGACGCCACUC--CAUCUCCAUCGCU----CCAUCUUCAUUUCCAUCUCC------ ((((.......((((.....((((((((....))))).)))((((((((....))).)))))..--))))......)).----))..................------ ( -25.12, z-score = -1.40, R) >droSec1.super_3 5550157 97 + 7220098 GGGUCCAUUCUGAUGCUUUGUUGUUGGCCAUGGCCAGUCAAGUGGCUCUGUCCAGACGCCACUC--CAUCGCCAUCGCU----CCAUCUUCAUUUCCAUCUCC------ (((........((((....((...((((.((((.......(((((((((....))).)))))))--))).))))..)).----.))))......)))......------ ( -26.75, z-score = -1.52, R) >droYak2.chr2L 12796433 88 + 22324452 GGGUCCAUUCUAGUGCUUUAUUGUUGGCCAAGGCCAGUCAAGUGGC-------------CACUC--CAUCUCCAUCGCCAUCUCCAUCUUGAUUUCCAUGCCC------ ((((.......((((((...((((((((....))))).)))..)).-------------)))).--.............(((........)))......))))------ ( -18.50, z-score = -0.03, R) >droEre2.scaffold_4929 10727585 107 + 26641161 GGGUACAUUGUGGUGCUUUAUUGUUGGCCAAGGCCAGUCGAAUGGCUCUGGCCAGACGGCACUC--CAUCGCCAUCGCCAUCGCCAUCUCCAUCUUCAUUUCCAUUUCC .(((.....((((((........(((((((..((((......))))..)))))))..(((....--....)))..)))))).)))........................ ( -33.90, z-score = -1.78, R) >consensus GGGUCCAUUCUGAUGCUUUGUUGUUGGCCAAGGCCAGUCAAGUGGCUCUGUCCAGACGCCACUC__CAUCUCCAUCGCU____CCAUCUUCAUUUCCAUCUCC______ (((........((((.....((((((((....))))).)))((((((((....))).)))))......................))))......)))............ (-17.51 = -18.10 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:29:37 2011