| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,593,851 – 4,593,917 |
| Length | 66 |
| Max. P | 0.955008 |
| Location | 4,593,851 – 4,593,917 |
|---|---|
| Length | 66 |
| Sequences | 4 |
| Columns | 69 |
| Reading direction | reverse |
| Mean pairwise identity | 90.58 |
| Shannon entropy | 0.15381 |
| G+C content | 0.44862 |
| Mean single sequence MFE | -19.27 |
| Consensus MFE | -17.30 |
| Energy contribution | -17.30 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.61 |
| SVM RNA-class probability | 0.955008 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4593851 66 - 22422827 GGAAAAGCAUGCCAAU---GAGAUAUUUUUCUCUGUGUACCCAUUAGGUGUGCAGAGAGCGUCUGUGUG .......(((((....---.((((....(((((((..((((.....))))..))))))).))))))))) ( -19.70, z-score = -2.34, R) >droSec1.super_4 4042941 69 + 6179234 GGAGAAGCAUGCCAAUUUCAAGAUAUUUUUCUCUGUGUACCCAUUAGGUGUGCAGAGAGCGUCUGUGUG ..(((.((......(((....))).....((((((..((((.....))))..)))))))).)))..... ( -19.60, z-score = -1.87, R) >droYak2.chrX 17924380 68 + 21770863 -GGAAAGCGUGCCAAUUUCGUUAUAUUUUUCUCUGUGUACCCAUUAGGUGUGCAGAGAGCGUCUGUGUG -(((.((((.........))))......(((((((..((((.....))))..)))))))..)))..... ( -19.00, z-score = -2.23, R) >droEre2.scaffold_4690 1971105 69 - 18748788 GGAAAAGCAUGCCAGUUUUGUGAUAUUUUUCUCUGUGUACCCAUUAGGUGUGCAGAGAGCGUUUGUGUG ...(((((......))))).........(((((((..((((.....))))..))))))).......... ( -18.80, z-score = -2.01, R) >consensus GGAAAAGCAUGCCAAUUUCGAGAUAUUUUUCUCUGUGUACCCAUUAGGUGUGCAGAGAGCGUCUGUGUG ............................(((((((..((((.....))))..))))))).......... (-17.30 = -17.30 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:15:19 2011