| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,578,369 – 4,578,422 |
| Length | 53 |
| Max. P | 0.998901 |
| Location | 4,578,369 – 4,578,422 |
|---|---|
| Length | 53 |
| Sequences | 5 |
| Columns | 53 |
| Reading direction | forward |
| Mean pairwise identity | 94.72 |
| Shannon entropy | 0.09112 |
| G+C content | 0.38643 |
| Mean single sequence MFE | -13.90 |
| Consensus MFE | -13.00 |
| Energy contribution | -13.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.83 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.32 |
| SVM RNA-class probability | 0.998324 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4578369 53 + 22422827 GGAUAUUGAUAUUUCCCACACAGAUACACACCUACAAACGUGUAUCUGCGUUU (((.((....)).))).((.(((((((((..........))))))))).)).. ( -14.30, z-score = -4.05, R) >droSim1.chrX_random 1621701 52 + 5698898 -GGUAUUGAUAUUUCCCACACAGAUACACACCUACAAACGUGUAUCUGCGUUU -................((.(((((((((..........))))))))).)).. ( -13.00, z-score = -3.03, R) >droSec1.super_4 4027691 53 - 6179234 GGGUAUUGAUAUUUCCCACACAGAUACACACCUACAAACGUGUAUCUGCGUUU (((...........)))((.(((((((((..........))))))))).)).. ( -16.20, z-score = -3.77, R) >droYak2.chrX 17908859 53 - 21770863 GAAUAUUGAUAUUUUCCACACAGAUACACACAUACAAACGUGUAUCUGCGUUU .................((.(((((((((..........))))))))).)).. ( -13.00, z-score = -4.01, R) >droEre2.scaffold_4690 1955716 53 + 18748788 GAAUAUUGAUAUUUCCCACACAGAUACACACCAACAAACGUGUAUCUGCGUUU .................((.(((((((((..........))))))))).)).. ( -13.00, z-score = -4.30, R) >consensus GGAUAUUGAUAUUUCCCACACAGAUACACACCUACAAACGUGUAUCUGCGUUU .................((.(((((((((..........))))))))).)).. (-13.00 = -13.00 + 0.00)
| Location | 4,578,369 – 4,578,422 |
|---|---|
| Length | 53 |
| Sequences | 5 |
| Columns | 53 |
| Reading direction | reverse |
| Mean pairwise identity | 94.72 |
| Shannon entropy | 0.09112 |
| G+C content | 0.38643 |
| Mean single sequence MFE | -18.52 |
| Consensus MFE | -18.30 |
| Energy contribution | -18.30 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -4.02 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.54 |
| SVM RNA-class probability | 0.998901 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4578369 53 - 22422827 AAACGCAGAUACACGUUUGUAGGUGUGUAUCUGUGUGGGAAAUAUCAAUAUCC ..(((((((((((((........)))))))))))))................. ( -18.30, z-score = -3.90, R) >droSim1.chrX_random 1621701 52 - 5698898 AAACGCAGAUACACGUUUGUAGGUGUGUAUCUGUGUGGGAAAUAUCAAUACC- ..(((((((((((((........)))))))))))))................- ( -18.30, z-score = -3.74, R) >droSec1.super_4 4027691 53 + 6179234 AAACGCAGAUACACGUUUGUAGGUGUGUAUCUGUGUGGGAAAUAUCAAUACCC ..(((((((((((((........)))))))))))))(((...........))) ( -19.40, z-score = -3.85, R) >droYak2.chrX 17908859 53 + 21770863 AAACGCAGAUACACGUUUGUAUGUGUGUAUCUGUGUGGAAAAUAUCAAUAUUC ..(((((((((((((........)))))))))))))................. ( -18.30, z-score = -4.39, R) >droEre2.scaffold_4690 1955716 53 - 18748788 AAACGCAGAUACACGUUUGUUGGUGUGUAUCUGUGUGGGAAAUAUCAAUAUUC ..(((((((((((((........)))))))))))))................. ( -18.30, z-score = -4.21, R) >consensus AAACGCAGAUACACGUUUGUAGGUGUGUAUCUGUGUGGGAAAUAUCAAUAUCC ..(((((((((((((........)))))))))))))................. (-18.30 = -18.30 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:15:17 2011