| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,529,669 – 4,529,763 |
| Length | 94 |
| Max. P | 0.607926 |
| Location | 4,529,669 – 4,529,763 |
|---|---|
| Length | 94 |
| Sequences | 7 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 68.70 |
| Shannon entropy | 0.59498 |
| G+C content | 0.61184 |
| Mean single sequence MFE | -35.97 |
| Consensus MFE | -21.50 |
| Energy contribution | -20.67 |
| Covariance contribution | -0.82 |
| Combinations/Pair | 1.58 |
| Mean z-score | -0.51 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.607926 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4529669 94 + 22422827 GUGGCCUGAUUCUGGUCGCGAUUCAUGUUCCAUGGAGGCACAUCCUGGCGGCGGGACUGAUCCCAGGGCACAACUGUGGGUGCUGCCACUGGCU ((((((.......))))))..((((((...))))))(((.((...(((((((((((....))))....(((....)))...))))))).))))) ( -35.10, z-score = 0.40, R) >droSim1.chrX 3523329 94 + 17042790 GUGGCCAGAUUCUGGUCGCGAUUCAUUUUCCAUGGACGCACAUCCUGGCGGCUGGACUGAUCCUAGGGCACAACUGUGGGUGCUGCCACUGGCU ((((((((...))))))))..........((((((..((((.((((((.(((......).))))))))(((....))).))))..))).))).. ( -32.90, z-score = -0.27, R) >droSec1.super_4 3979625 94 - 6179234 GUGGCCAGAUUCUGGUCGCGAUUCAUUUUCCAUGGACGCACAUCCUGGCGGCUGGACUGAUCCCAGGGCACAACUGUGGGUGCUGCCACUGGCU ((((((((...))))))))..........((((((..((((.((((((.(((......).))))))))(((....))).))))..))).))).. ( -35.20, z-score = -0.57, R) >droYak2.chrX 17858583 94 - 21770863 GCGGCCGGAUGCUGGCCGCGAUUUAUGUUCCAUGGAGGCACAAGCUGGCGGCAGGACUGAGCCCAGGGCACAGAUGUGGGUGCUGCCACUGGCU ((((((((...))))))))......(((.((.....)).)))(((..(.(((((.(((..(((...)))((....)).))).))))).)..))) ( -42.20, z-score = -0.88, R) >droEre2.scaffold_4690 1906710 94 + 18748788 GUGGCCGGAUUCUGGCCGCAAUCCAUGUUCCACGGAGGCACACCGUGGCGGCAGGACUGGUCCCAGGGCACAACUGUGAGUGCUGCCGCUGGCU ((((((((...))))))))...(((.....(((((.......)))))(((((((.(((.(((....)))((....)).))).)))))))))).. ( -42.80, z-score = -0.80, R) >droPer1.super_2206 2348 85 + 3766 GCGGGCAGGCUUUGAUGGCGCUGCCGCUGAUCGGGGAGU--------GCAGUACAAUUGACCCGAAUGCAUGCUCAC-AUUGCUGCGACUGGUC ((((.((((((.....))).))))))).((((((((.((--------.((((...))))))))...((((.((....-...)))))).)))))) ( -28.80, z-score = 0.29, R) >dp4.chrXL_group1e 569069 85 - 12523060 GCGGGCAGGCUUUGAUGGCGCUGCCGCUGAUCGGGAAGU--------GCAGUACAAUUGAGCCGAAUGCAUGCUCAU-AUUGCUGCGACUGGUC ((((.((((((.....))).))))))).((((((....(--------((((((....(((((.........))))).-..))))))).)))))) ( -34.80, z-score = -1.75, R) >consensus GUGGCCAGAUUCUGGUCGCGAUUCAUGUUCCAUGGAGGCACAUCCUGGCGGCAGGACUGAUCCCAGGGCACAACUGUGGGUGCUGCCACUGGCU ((((((((...))))))))..(((((.....))))).........(((((((....(((....)))..(((....)))...)))))))...... (-21.50 = -20.67 + -0.82)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:15:16 2011