| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,504,623 – 4,504,679 |
| Length | 56 |
| Max. P | 0.625779 |
| Location | 4,504,623 – 4,504,679 |
|---|---|
| Length | 56 |
| Sequences | 10 |
| Columns | 56 |
| Reading direction | reverse |
| Mean pairwise identity | 95.72 |
| Shannon entropy | 0.08166 |
| G+C content | 0.34296 |
| Mean single sequence MFE | -10.39 |
| Consensus MFE | -10.43 |
| Energy contribution | -10.09 |
| Covariance contribution | -0.34 |
| Combinations/Pair | 1.20 |
| Mean z-score | -0.81 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.625779 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4504623 56 - 22422827 UGUUGAUAUUUACUCAAGUGUAAUUGCGAAUUGUAAAUGCGACAACACAGAUGCUC (((((.(((((((.....(((....)))....))))))))))))............ ( -10.40, z-score = -0.54, R) >droSim1.chrX 3506087 56 - 17042790 UGUUGAUAUUUACUCAAGUGUAAUUGCGAAUUGUAAAUGCGACAACACAGAUGCUC (((((.(((((((.....(((....)))....))))))))))))............ ( -10.40, z-score = -0.54, R) >droAna3.scaffold_13335 1469974 56 + 3335858 UGUUGAUAUUUGUUCAAGUGUAAUUGCGAAUUGUAAAUGCGACAACACAGAUGCUC ......(((((((.....((((.((((.....)))).)))).....)))))))... ( -8.90, z-score = 0.51, R) >droVir3.scaffold_13042 2977918 56 - 5191987 UGUUGAUAUUUACUCAAGUGUAAUUGCAAAUUGUAAAUGCGACAACACAGAUGCUC (((((.(((((((.....(((....)))....))))))))))))............ ( -11.10, z-score = -0.94, R) >droGri2.scaffold_14853 1270941 53 - 10151454 UGUUGAUAUUUACUCAAGUGUAAUUGCAAAUUGUAAAUGCGACAACACAGAUG--- (((((.(((((((.....(((....)))....)))))))))))).........--- ( -11.10, z-score = -1.41, R) >droPer1.super_15 1035143 53 + 2181545 UGUUGAUAUUUACUCAAGUGUAAUUGCGAAUUGUAAAUGCGACAACACAGAUG--- (((((.(((((((.....(((....)))....)))))))))))).........--- ( -10.40, z-score = -1.03, R) >dp4.chrXL_group1a 401760 53 + 9151740 UGUUGAUAUUUACUCAAGUGUAAUUGCGAAUUGUAAAUGCGACAACACAGAUG--- (((((.(((((((.....(((....)))....)))))))))))).........--- ( -10.40, z-score = -1.03, R) >droEre2.scaffold_4690 1883893 53 - 18748788 UGUUGAUAUUUACUCAAGUGUAAUUGCGAAUUGUAAAUGCGACAACACAGAUG--- (((((.(((((((.....(((....)))....)))))))))))).........--- ( -10.40, z-score = -1.03, R) >droYak2.chrX 17837145 53 + 21770863 UGUUGAUAUUUACUCAAGUGUAAUUGCGAAUUGUAAAUGCGACAACACAGAUG--- (((((.(((((((.....(((....)))....)))))))))))).........--- ( -10.40, z-score = -1.03, R) >droSec1.super_4 3954656 53 + 6179234 UGUUGAUAUUUACUCAAGUGUAAUUGCGAAUUGUAAAUGCGACAACACAGAUG--- (((((.(((((((.....(((....)))....)))))))))))).........--- ( -10.40, z-score = -1.03, R) >consensus UGUUGAUAUUUACUCAAGUGUAAUUGCGAAUUGUAAAUGCGACAACACAGAUG___ (((((.(((((((.....(((....)))....))))))))))))............ (-10.43 = -10.09 + -0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:15:13 2011