| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,500,547 – 4,500,637 |
| Length | 90 |
| Max. P | 0.914993 |
| Location | 4,500,547 – 4,500,637 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 84.23 |
| Shannon entropy | 0.27471 |
| G+C content | 0.50114 |
| Mean single sequence MFE | -32.86 |
| Consensus MFE | -22.66 |
| Energy contribution | -25.22 |
| Covariance contribution | 2.56 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.24 |
| SVM RNA-class probability | 0.914993 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4500547 90 + 22422827 GGCCAGACGCACAGAUACACCUUAGGGUACGCCCCACAGAGCUACAGAUACAGAUAGAGAAUAU----------------GUAUGUGUGUGUACUGGGGCGACCCA .((.....))..............((((.(((((((....((.(((.(((((...........)----------------)))).)))))....))))))))))). ( -31.60, z-score = -2.89, R) >droSim1.chrX 3502098 96 + 17042790 GGCCAGACGCACAGAUACACCUUAGGGUACGCCCCACAGAGCUACUAGUACAGAUAGAGAAUAUA--------UAUAUAUAUGUCUGUGUG--CUGGGGCGACCCA .((.....))..............((((.((((((..((.....))((((((..((((..(((((--------....))))).))))))))--)))))))))))). ( -29.80, z-score = -1.72, R) >droSec1.super_4 3950568 98 - 6179234 GGCCAGACGCACAGAUACACCUUAGGGUACGCCCCACAGAGCUACAGAUACAGAUAGAGUAUAUA--------UAUAUAUAUGUGUGUGUGUACUGGGGCGACCCA .((.....))..............((((.(((((((....(.((((.(((((.(((..((((...--------.)))).))).))))).)))))))))))))))). ( -33.50, z-score = -2.61, R) >droYak2.chrX 17833136 103 - 21770863 GGCCAGACGCACAGAUACACCUUAGAGUACGCCCCACAGAGCUACAGAUACAGAUAGAGAAUACU---AUAUGUGUGUACACAUGUGUGUGUGCUGGGGCGACCCA .((.....))..............(.((.(((((((...........(((((.((((......))---)).)))))(((((((....)))))))))))))))).). ( -30.20, z-score = -1.16, R) >droEre2.scaffold_4690 1879832 106 + 18748788 GGCCAGACGCACAGAUACACCUUAGGGUACGCCCCACAGAGUUACAGAUACAGAUAGAGAACAUACACAUAUGUGUGUGUACACAUGUGUGUGCUGGGGCGACCCA .((.....))..............((((.(((((((....(((....((....))....))).(((((((((((((....))))))))))))).))))))))))). ( -39.20, z-score = -3.13, R) >consensus GGCCAGACGCACAGAUACACCUUAGGGUACGCCCCACAGAGCUACAGAUACAGAUAGAGAAUAUA________UAUAUAUAUAUGUGUGUGUACUGGGGCGACCCA .((.....))..............((((.(((((((....(.((((.(((((.(((....((((((......)))))).))).))))).)))))))))))))))). (-22.66 = -25.22 + 2.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:15:12 2011