| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,474,707 – 4,474,802 |
| Length | 95 |
| Max. P | 0.505834 |
| Location | 4,474,707 – 4,474,802 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 80.95 |
| Shannon entropy | 0.35844 |
| G+C content | 0.51973 |
| Mean single sequence MFE | -23.95 |
| Consensus MFE | -13.78 |
| Energy contribution | -14.00 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.505834 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chrX 4474707 95 - 22422827 AUCCCAUCGCGUGAUCCAAUCGGAUUACCCCGAUCCGAUCCGAUCCGAUAACAUAUACCAUAUACGAAUCGUCGCCAGUGCGAUCAAAUCAGCGA ......(((((.((((..((((((((.....))))))))..)))))...................((...(((((....)))))....)).)))) ( -24.70, z-score = -1.75, R) >dp4.chrXL_group1a 365305 92 + 9151740 AUCCGAUCGCGCGAUCCAAUCGGAUCCGACCCAUCCAUUCCAAUCCACU--CCGAUACGUUAGGGGUACGGGUA-CGAUACGAUCGAAUCCGCGA ......((((((((((..((((.(((((((((..........(((....--..))).(....))))).))))).-))))..)))))....))))) ( -28.10, z-score = 0.12, R) >droEre2.scaffold_4690 1853947 85 - 18748788 AUCCCAUCGCGUGAUCCAAUCGGAU--CCCCGAUACUAUGCGAUC--------GAUACCAUAUACCAAUCGUCGCCAGUGCGAUCAAAUCAGCGA ......((((.((((((((((((..--..))))).....((((.(--------(((...........))))))))...)).))))).....)))) ( -23.80, z-score = -2.17, R) >droYak2.chrX 17808134 93 + 21770863 AUCCCAUCGCGUGAUCCAAUCGGAU--CCCCGAUACAAUACGAUCCGAUACCAUAUACCAUAUACCAAUCGUCGCCAGUGCGAUCAAAUCAGCGA ......((((.((((...(((((((--(.............)))))))).....................(((((....)))))...)))))))) ( -21.62, z-score = -2.02, R) >droSec1.super_4 3925638 88 + 6179234 AUCCCAUCGCGUGAUCCAAUCGGAUUCCCCCGAUCCGUUCCGAUCC-------GAUACCAUAUACCAAUCGUCGCCAGUGCGAUCAAAUCAGCGA ......(((((.((((....((((((.....))))))....)))))-------.................(((((....))))).......)))) ( -20.80, z-score = -1.55, R) >droSim1.chrX 3477163 88 - 17042790 AUCCCAUCGCGUGAUCCAAUCGGAUUCCCCCGAUCCGAUCCGAUCC-------GAUACCAUAUACCAAUCGCCGCCAGUGCGAUCAAAUCAGCGA ......(((((.((((..((((((((.....))))))))..)))))-------..............((((((....).))))).......)))) ( -24.70, z-score = -2.68, R) >consensus AUCCCAUCGCGUGAUCCAAUCGGAUUCCCCCGAUCCGAUCCGAUCC_______GAUACCAUAUACCAAUCGUCGCCAGUGCGAUCAAAUCAGCGA ......((((.(((((..(((((......))))).......................................((....))))))).....)))) (-13.78 = -14.00 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:15:11 2011