| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,467,226 – 4,467,369 |
| Length | 143 |
| Max. P | 0.500000 |
| Location | 4,467,226 – 4,467,369 |
|---|---|
| Length | 143 |
| Sequences | 6 |
| Columns | 148 |
| Reading direction | forward |
| Mean pairwise identity | 81.67 |
| Shannon entropy | 0.35142 |
| G+C content | 0.49421 |
| Mean single sequence MFE | -42.47 |
| Consensus MFE | -23.77 |
| Energy contribution | -25.00 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chrX 4467226 143 + 22422827 UCGCUUACCAUGUCCGUGAUGCGCUAUCGCAUGUCUAGUAUCACUUUCGAUGGCCUUAUC--AACGCUAUCAUUUCUAGAACAGGGACGCGAAGGGGGAAACUUUGCGCACGCGCAAUGCAUCACGUUUAUUAGCCAACA---CCCAA ..(((....(((..(((((((((....(((.(((((((..........((((((......--...))))))....)))).))).(..(((((((.......)))))))..))))...)))))))))..))).))).....---..... ( -40.64, z-score = -1.20, R) >droSim1.chrX 3469854 146 + 17042790 UCGCUUACCAUGUCCGUGAUGCGCUAUCGCAUGUCUAGUAUCACUUUCGAUGGCCUUAUC--AACGCUAUCAUUUCUAGAACAGGGACGCGCAGGGGGAAACUUUGCGCACGCGCAGUGCAUCACGUUUAUUAGCCAACAACACCCAA ..(((....(((..(((((((((((..(((..((((....((......((((((......--...)))))).......))....))))((((((((.....))))))))..))).)))))))))))..))).)))............. ( -49.52, z-score = -3.34, R) >droSec1.super_4 3918329 146 - 6179234 UCGCUUUCCAUGUCCGUGAUGCGCUAUCGCAUGUCUAGUAUCACUUUCGAUGGGCUUAUC--AACGCUAUCAUUUCUAGAACAGGGACGCGCAGGCGGAAACUUUGCGCACGCGCAGUGCAUCACGUUUAUUAGCCAACAACACUCAA ..(((....(((..(((((((((((..(((.(((((((((((......))))(((.....--...))).......)))).))).....(((((((.(....))))))))..))).)))))))))))..))).)))............. ( -47.40, z-score = -2.74, R) >droYak2.chrX 17800876 143 - 21770863 UCGCUUACCAUGUCCGUGAUGCGCUAUCGCAUGUCUAGUAUCACUUUCGAUGGCCUUAUC--AUCGCAAUCAUUUCUAGAACAGGGACUCGAAGGGGGAAACUUUGCGCACGCGCAGUGCAUCACGUUUAGUAGCCAACA---CCCAA ..(((.....((..(((((((((((.((.(.(((((((.........((((((.....))--)))).........)))).)))).))(((....)))........(((....))))))))))))))..))..))).....---..... ( -42.57, z-score = -1.50, R) >droEre2.scaffold_4690 1846658 142 + 18748788 UCGCUUACCAUGUCCGUGAUGCGCUAUCGCAUGUCUAGUAUCACUUUCGAUGGCCUUAUC--AACGCUAUCACUUCUAGAAGAGGGACUCGAAGG-GGCCACUUUGCGCACGCGCAGUGCAUCACGUUUAGUAGCCAACA---CCCAA ..(((.....((..(((((((((((..(((.(((..(((....(((((((((((......--...)))))).((((.....)))).....)))))-....)))....))).))).)))))))))))..))..))).....---..... ( -44.10, z-score = -1.63, R) >droAna3.scaffold_13335 1429346 125 - 3335858 UCUAUUACCAGGU--AAGAUCUGCUAUCGCAUGUCUGGAAUCACUUUCGAUGGUGCUAUCUGGAUGUCUUGAUUUCUGGA---------CUUUUUCAAAAGCCAUCCGCACGCGCACCGCCUCACGUGUAUGGAAC------------ ((((((((.((((--.((((.(((....))).)))).(((.....)))...(((((....((((((.(((......((((---------....)))).))).)))))).....)))))))))...))).)))))..------------ ( -30.60, z-score = -0.26, R) >consensus UCGCUUACCAUGUCCGUGAUGCGCUAUCGCAUGUCUAGUAUCACUUUCGAUGGCCUUAUC__AACGCUAUCAUUUCUAGAACAGGGACGCGAAGGGGGAAACUUUGCGCACGCGCAGUGCAUCACGUUUAUUAGCCAACA___CCCAA ..(((....(((..(((((((((((((((...((........))...))))))).................................................(((((....))))).))))))))..))).)))............. (-23.77 = -25.00 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:15:09 2011