| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,466,168 – 4,466,227 |
| Length | 59 |
| Max. P | 0.859073 |
| Location | 4,466,168 – 4,466,227 |
|---|---|
| Length | 59 |
| Sequences | 5 |
| Columns | 66 |
| Reading direction | forward |
| Mean pairwise identity | 90.30 |
| Shannon entropy | 0.15428 |
| G+C content | 0.42732 |
| Mean single sequence MFE | -8.89 |
| Consensus MFE | -8.34 |
| Energy contribution | -8.54 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.859073 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4466168 59 + 22422827 ACGAGCUAACAACCGCAUCUAGUGGUGCAUCAUGCAAUCUUCCUCUUCAAUUUCCAUUU------- ..(((......(((((.....)))))((.....)).......)))..............------- ( -9.20, z-score = -1.54, R) >droSim1.chrX 3468779 66 + 17042790 ACGAGCUAACAACCGCAUCUAGUGGUGCAUCAUGCAAUCUUCCUCUUCAACUUCCAUUUUCCAUUU ..(((......(((((.....)))))((.....)).......)))..................... ( -9.20, z-score = -1.65, R) >droSec1.super_4 3917141 66 - 6179234 ACGAGCUAACAACCGCAUCUAGUGGUGCAUCAUGCAAUCUUCCUCUUCAACUUCCAUUUUCCAUUU ..(((......(((((.....)))))((.....)).......)))..................... ( -9.20, z-score = -1.65, R) >droYak2.chrX 17799751 59 - 21770863 GCGACCAAACAACCGCAUCUAGUGGUGCAUCAUGCAAUCUUCCUCUUCAAUUUCCAUUU------- (((........(((((.....)))))......)))........................------- ( -7.64, z-score = -0.96, R) >droEre2.scaffold_4690 1845508 59 + 18748788 ACGAGCAAACAACCGCAUCUAGUGGUGCAUCAUGCAAUCUUCCUCUUCAAUUUCCAUUU------- ..(((......(((((.....)))))((.....)).......)))..............------- ( -9.20, z-score = -1.45, R) >consensus ACGAGCUAACAACCGCAUCUAGUGGUGCAUCAUGCAAUCUUCCUCUUCAAUUUCCAUUU_______ ..(((......(((((.....)))))((.....)).......)))..................... ( -8.34 = -8.54 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:15:07 2011