| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,457,068 – 4,457,167 |
| Length | 99 |
| Max. P | 0.667739 |
| Location | 4,457,068 – 4,457,167 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 97.96 |
| Shannon entropy | 0.03646 |
| G+C content | 0.49899 |
| Mean single sequence MFE | -27.72 |
| Consensus MFE | -24.48 |
| Energy contribution | -24.36 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.667739 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4457068 99 - 22422827 CUGCCACACAUGAUCGCAACUCGUAAAUAAACGAAAACCGAAAGGGGCACGUGCCGCUCAAUGUGCAAGGAUCAAGGAUCUCCCCCUUUGGCAAUUCUA .(((((....(((((.....((((......))))...((....)).((((((........))))))...)))))(((.......))).)))))...... ( -28.30, z-score = -1.97, R) >droSim1.chrX 3458412 97 - 17042790 CUGCCACACAUGAUCGCAACUCGUAAAUAAACGAAAACCGA--GGGGCACGUGCCGCUCAAUGUGCAAGGAUCAAGGAUCUCCCCCUUUGGCAAUUCUA .(((((....((((((((..((((......)))).....((--(.(((....))).)))....)))...)))))(((.......))).)))))...... ( -28.20, z-score = -1.87, R) >droSec1.super_4 3908122 97 + 6179234 CUGCCACACAUGAUCGCAACUCGUAAAUAAACGAAAACCGA--GGGGCACGUGCCGCUCAAUGUGCAAGGAUCAAGGAUCUCCCCCUUUGGCAAUUCUA .(((((....((((((((..((((......)))).....((--(.(((....))).)))....)))...)))))(((.......))).)))))...... ( -28.20, z-score = -1.87, R) >droYak2.chrX 17790202 97 + 21770863 CUGGCACACAUGAUCGCAACUCGUAAAUAAACGAAAACCGA--GGGGCACGUGCCGCUCAAUGUGCAAGAAUCAAGGAUCUCCCCCUUUGUCAAUUCUA ...(((((............((((......)))).....((--(.(((....))).)))..))))).((((((((((........)))))...))))). ( -25.70, z-score = -1.64, R) >droEre2.scaffold_4690 1836288 97 - 18748788 CUGCCACACAUGAUCGCAACUCGUAAAUAAACGAAAACCGA--GGGGCACGUGCCGCUCAAUGUGCAAGGAUCAAGGAUCUCCCCCUUUGGCAAUUCUA .(((((....((((((((..((((......)))).....((--(.(((....))).)))....)))...)))))(((.......))).)))))...... ( -28.20, z-score = -1.87, R) >consensus CUGCCACACAUGAUCGCAACUCGUAAAUAAACGAAAACCGA__GGGGCACGUGCCGCUCAAUGUGCAAGGAUCAAGGAUCUCCCCCUUUGGCAAUUCUA .(((((.......(((....((((......))))....)))..(((((((((........))))))..(((((...)))))..)))..)))))...... (-24.48 = -24.36 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:15:04 2011