| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,440,175 – 4,440,228 |
| Length | 53 |
| Max. P | 0.548666 |
| Location | 4,440,175 – 4,440,228 |
|---|---|
| Length | 53 |
| Sequences | 6 |
| Columns | 64 |
| Reading direction | reverse |
| Mean pairwise identity | 75.53 |
| Shannon entropy | 0.42234 |
| G+C content | 0.46029 |
| Mean single sequence MFE | -13.15 |
| Consensus MFE | -8.38 |
| Energy contribution | -8.80 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.548666 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4440175 53 - 22422827 -----------GUCGAACUUGGGUGACUCAAGCCAAGUUGUUGGCCUAACCGCUUUGACAAAAA -----------(((((((((((.(......).)))))))...(((......))).))))..... ( -13.50, z-score = -0.98, R) >droWil1.scaffold_181150 2506018 62 - 4952429 UUUUUCUUCGUGCUGACUUCAGCUGAA--AAUUUAUUUUGCCAUCGCAGCCGCUGCAAAAAACA ......((((.((((....))))))))--......((((((....((....)).)))))).... ( -12.30, z-score = -0.80, R) >droSim1.chrX 3440908 53 - 17042790 -----------GUCGAACUUGGGUGACUCAAGCCAAGUUGUUGGCCUAACCGCUUUGACAAAAA -----------(((((((((((.(......).)))))))...(((......))).))))..... ( -13.50, z-score = -0.98, R) >droSec1.super_4 3891593 53 + 6179234 -----------GUCGAACUUGGGUGACUCAAGCCAAGUUGUUGGCCUAACCGCUUUGACAAAAA -----------(((((((((((.(......).)))))))...(((......))).))))..... ( -13.50, z-score = -0.98, R) >droYak2.chrX 17773373 53 + 21770863 -----------GUCGAACUUCGGUGACUCAAGCCAAGUUAUUGGCCUAACCGCUCUGACAAAAA -----------((((.....((((.......(((((....)))))...))))...))))..... ( -12.70, z-score = -1.78, R) >droEre2.scaffold_4690 1818897 53 - 18748788 -----------GUCGAACUUGGGUGACUCAAGCCAAGUUAUUGGCCUAACCGCUCUGACAAAAA -----------(((((((((((.(......).)))))))...(((......))).))))..... ( -13.40, z-score = -1.52, R) >consensus ___________GUCGAACUUGGGUGACUCAAGCCAAGUUGUUGGCCUAACCGCUUUGACAAAAA ...........(((((((((((.(......).)))))))...(((......))).))))..... ( -8.38 = -8.80 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:15:03 2011