| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,424,353 – 4,424,471 |
| Length | 118 |
| Max. P | 0.559258 |
| Location | 4,424,353 – 4,424,471 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 84.59 |
| Shannon entropy | 0.26412 |
| G+C content | 0.41940 |
| Mean single sequence MFE | -25.59 |
| Consensus MFE | -15.64 |
| Energy contribution | -16.40 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.559258 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4424353 118 + 22422827 CCCCGCCCGCAAAAA--AUCGCGAAAUCUUACACCGAAACCGAAAUACAAGAUAAUUAAGGGUAUAAAUCCCUCGAAGCGACAGAAAAGCGGGCGAAAAAGGAUACAAUUUCUAGACUUU ...(((((((.....--.((((...(((((....((....))......)))))..(..((((.......))))..).)))).......)))))))....((((......))))....... ( -28.72, z-score = -2.85, R) >droEre2.scaffold_4690 1802913 118 + 18748788 CCCCGCCCGCAAAAAGAAACGCUAACUUUAAUACCGACACC-AAAUAGAAGAAAAUAAUAAGUACAA-UCCCGCGGUCCGAAGGAAAAGCGGGCGAAAAAGGAUACAAAUCCUAGGCUUU .(((((((((....((.....))..((((...((((.....-.........................-.....))))...))))....)))))))....(((((....))))).)).... ( -24.15, z-score = -1.05, R) >droYak2.chrX 17757501 115 - 21770863 CCCCCCCCGCAAAAA--AACGCGAACUUUAACACCGAAAGC-AAAUCGAAGAAAAUAUAAG-UACAU-UUUCUCGAAGUGAAAGAAAAGCGGGCGAAAAAGGAUAGAAAUCCUAGACUUU ....((((((.....--.................(....)(-(..((((.((((((.....-...))-))))))))..))........))))).)....(((((....)))))....... ( -23.50, z-score = -2.47, R) >droSec1.super_4 3876106 116 - 6179234 CCCCGCCCGCAAAAA--AACGCGAAAUCUAACACCGAAACCGAAAUAGAAGAUAAUUUAGGGUAUAU-UCCCUCGAAGCAACAGAAAAGCGGGCGAAAAAGGAUAAAAAUUCU-GACUUU ...(((((((.....--.........((((....((....))...))))......((.((((.....-.)))).))............)))))))....(((((....)))))-...... ( -24.60, z-score = -1.76, R) >droSim1.chrX 3424009 117 + 17042790 CCCCGCCCGCAAAAA--AACGCGAAAUCUAACACCGAAACCGAAAUAGAAGAUAAUUUAGGGUAUAU-UCCCUCGAAGCGACAGAAAAGCGGGCGAAAAAGGAUAAAAAUUCUAGACUUU ...(((((((.....--..(((....((((....((....))...))))......((.((((.....-.)))).)).)))........)))))))....(((((....)))))....... ( -26.96, z-score = -2.23, R) >consensus CCCCGCCCGCAAAAA__AACGCGAAAUCUAACACCGAAACCGAAAUAGAAGAUAAUUUAGGGUAUAU_UCCCUCGAAGCGACAGAAAAGCGGGCGAAAAAGGAUAAAAAUUCUAGACUUU ...(((((((................................................((((.......)))).....(....)....)))))))....(((((....)))))....... (-15.64 = -16.40 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:14:59 2011