| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,099,298 – 10,099,391 |
| Length | 93 |
| Max. P | 0.912497 |
| Location | 10,099,298 – 10,099,391 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 69.57 |
| Shannon entropy | 0.49071 |
| G+C content | 0.48586 |
| Mean single sequence MFE | -24.04 |
| Consensus MFE | -15.01 |
| Energy contribution | -15.30 |
| Covariance contribution | 0.29 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.22 |
| SVM RNA-class probability | 0.912497 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10099298 93 - 23011544 CAAAGCCGGAGACUCCAUCCUUCCGAGCUUUGCUUUCCACUUG--UACAGCCGGAUUUCAUCUGGCA---------------------UUCUCUAGCAUUCUGGUAUUGUCGAUCC (((((((((((.........))))).))))))........(((--.((((((((((...))))))).---------------------....((((....))))...))))))... ( -24.00, z-score = -1.52, R) >droSim1.chr2L 9887864 91 - 22036055 CAAAGCCGGAGACUCCAUCCUUCCGAGCUUUGCUUUCCACUUC--UCCAGCCGGAUUUCAUCUGGCA---------------------U--UCUAGCAUUCUGGUAUUGUCGAUCC (((((((((((.........))))).)))))).........((--..(((((((((...))))))).---------------------.--.((((....))))...))..))... ( -22.80, z-score = -1.21, R) >droSec1.super_3 5537272 91 - 7220098 CAAAGCCGGAGACUCCAUCCUUCCGAGCUUUGCUUUCCACUUC--CCCAGCCGGAUUUCAUCUGGCA---------------------U--UCUAGCAUUCUGGUAUUGUCGAUCC (((((((((((.........))))).)))))).........((--..(((((((((...))))))).---------------------.--.((((....))))...))..))... ( -22.70, z-score = -1.22, R) >droEre2.scaffold_4929 10714683 114 - 26641161 CAAAGCCGGAGACUCCAUCCUUCCGAGCUUUGCUUUCCACUUC--UCCAGCCGGAUUUCAUCUGGCAAUCCGUACUCCGGUAUUCCAGUAUUCCGGCAUUCUGGCAUUGUCGAUCC (((((((((((.........))))).))))))...((.((...--.(((((((((......((((.((((((.....))).)))))))...))))))....)))....)).))... ( -35.00, z-score = -3.12, R) >droWil1.scaffold_181132 73817 88 - 1035393 -------AAAAGCCAAGCACGUCCCAGCUUUACUUUACACUUCUGUGUGGGAACAUUUCUUUUUCCUUUUU-----------------UUUCUUGGCAUGUU-GCAUUGUUGA--- -------....((((((...................((((....))))(((((........))))).....-----------------...)))))).....-..........--- ( -15.70, z-score = -0.23, R) >consensus CAAAGCCGGAGACUCCAUCCUUCCGAGCUUUGCUUUCCACUUC__UCCAGCCGGAUUUCAUCUGGCA_____________________U__UCUAGCAUUCUGGUAUUGUCGAUCC (((.(((((((.............((((...))))..............((((((.....))))))................................))))))).)))....... (-15.01 = -15.30 + 0.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:29:34 2011