| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,421,474 – 4,421,586 |
| Length | 112 |
| Max. P | 0.532014 |
| Location | 4,421,474 – 4,421,586 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.24 |
| Shannon entropy | 0.21790 |
| G+C content | 0.52630 |
| Mean single sequence MFE | -39.78 |
| Consensus MFE | -26.18 |
| Energy contribution | -26.62 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.532014 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4421474 112 - 22422827 UUCAAUUGUUCGCACUCCAUG------UGAAUUUCCCUAGAGAAUUGGGGAGCAGCGGUUGGCUGCUCCCCC--GGGAAAUUCGCGUCACCAUGGUGAACUUUUUCAAUUCGGGGACCCU ..............((((.((------((((((((((.........((((((((((.....)))))))))).--))))))))))))((((....)))).............))))..... ( -47.20, z-score = -3.64, R) >droSim1.chrX 3421175 112 - 17042790 UUCAAUUGUUCGCACUCCAUG------UGAAUUUCCCCAGAGGAUUGGAGAGCAGCGUUCGUCUGCUCCCCC--GGGAAAUUCGCGUCACCAUGGUGAACUUUUCCAAUUCGGGGACCCU .......((((((.....(((------((((((((((....((...((.(((((((....).))))))))))--))))))))))))).......)))))).(..((.....))..).... ( -39.50, z-score = -2.06, R) >droSec1.super_4 3873232 118 + 6179234 UUCAAUUGUUCGCACUCCAUGUUCACAUGGAGUUCCCCAGAGGAUUGGAGAGCAGCGUUCGUCUGCUCCCCC--GGGAAAUUCGCGUCACCAUGGUGAACUUUUCCAAUUCGGGGACCCU (((((((.(..(.((((((((....))))))))....)..).)))))))(((((((....).))))))((((--((((((......((((....))))...)))))....)))))..... ( -44.10, z-score = -2.54, R) >droYak2.chrX 17753799 112 + 21770863 UUCAAUUGUUCGCACUCCAUG------UGAAUUUCCCCAGAGAAUUCGAAGGCAGCGCAGCGCUUUUCCCCC--GGCAAAUGCGCGUCACCAUGGUGAACUUUUCCAAUUCGGGGACUCU .......(((((((.....))------))))).(((((...(((((.(((((..(((((..(((........--)))...))))).((((....))))..))))).)))))))))).... ( -34.20, z-score = -1.40, R) >droEre2.scaffold_4690 1800139 114 - 18748788 UUCAAUUGUUCGCACUCCAAG------UGAAUUUCCCCAGAGAGUUCGAGAGCAGCGGACUGCUUUUCCCCCCGGGAAAAUGCGCGUCACCAUGGUGAACUUUUCCAAUCCGGGGACCCU .......((((((.......)------))))).(((((.((..((((....).)))(((..(((((((((...))))))).))...((((....)))).....)))..)).))))).... ( -33.90, z-score = -0.65, R) >consensus UUCAAUUGUUCGCACUCCAUG______UGAAUUUCCCCAGAGAAUUGGAGAGCAGCGGUCGGCUGCUCCCCC__GGGAAAUUCGCGUCACCAUGGUGAACUUUUCCAAUUCGGGGACCCU .................................(((((...(((((((((((((((.....)))))((((....))))........((((....))))...))))))))))))))).... (-26.18 = -26.62 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:14:58 2011