| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,416,411 – 4,416,503 |
| Length | 92 |
| Max. P | 0.713957 |
| Location | 4,416,411 – 4,416,503 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 79.87 |
| Shannon entropy | 0.28069 |
| G+C content | 0.37644 |
| Mean single sequence MFE | -17.14 |
| Consensus MFE | -15.44 |
| Energy contribution | -15.88 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.04 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.713957 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4416411 92 - 22422827 GCCAAACAGCUACAUUCUGUGGACAGGCACUGCGAAAAAAUAAUAAAAUAAAAUCUCACUCCGAUUGCAGAACCUUCAUUUAGAGUGGAUGA---------- ......((....(((((((..((.(((..((((((.............................))))))..)))))...)))))))..)).---------- ( -17.25, z-score = -0.83, R) >droSec1.super_4 3868236 99 + 6179234 GCCAAACAGCUACAUUCUGUGGACAGGCACUGCAAAAAACAAAAAA---AAGAGCUCACUUCGAUUGCAGACCCUUCAUUUAGAGUGUACUUUCUAAAAUAA .......((.(((((((((..((.(((..((((((...........---...............))))))..)))))...)))))))))))........... ( -18.77, z-score = -0.95, R) >droSim1.chrX 3416423 96 - 17042790 GCCAAACAGCUACAUUCUGUGGACAGACACUGCAAAA---AAACAA---AAAAACUCACUUCAAUUGCAGACCCUUCAUUUAGAGUGUACUUUCUAAAAUAA .......((.(((((((((..((.((...((((((..---......---...............))))))...))))...)))))))))))........... ( -15.40, z-score = -1.35, R) >consensus GCCAAACAGCUACAUUCUGUGGACAGGCACUGCAAAAAA_AAAAAA___AAAAACUCACUUCGAUUGCAGACCCUUCAUUUAGAGUGUACUUUCUAAAAUAA ((......))(((((((((..((.(((..((((((.............................))))))..)))))...)))))))))............. (-15.44 = -15.88 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:14:56 2011