| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,394,395 – 4,394,457 |
| Length | 62 |
| Max. P | 0.869475 |
| Location | 4,394,395 – 4,394,457 |
|---|---|
| Length | 62 |
| Sequences | 11 |
| Columns | 62 |
| Reading direction | forward |
| Mean pairwise identity | 96.89 |
| Shannon entropy | 0.06666 |
| G+C content | 0.35044 |
| Mean single sequence MFE | -13.71 |
| Consensus MFE | -13.50 |
| Energy contribution | -13.25 |
| Covariance contribution | -0.26 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.869475 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4394395 62 + 22422827 AGAAUUAUGUUGAUUGGCAGCAAUUUGUCAUAACGUGAAAUGAGUUUGUUGUCGUAACAAGC ....((((((((..((((((....)))))))))))))).....((((((((...)))))))) ( -13.60, z-score = -1.22, R) >droEre2.scaffold_4690 1771045 62 + 18748788 AGAAUUAUGUUGAUUGGCAGCAAUUUGUCAUAACGUGAAAUGAGUUUGUUGUCGUAACAAGC ....((((((((..((((((....)))))))))))))).....((((((((...)))))))) ( -13.60, z-score = -1.22, R) >droYak2.chrX 17726954 62 - 21770863 AGAAUUAUGUUGAUUGGCAGCAAUUUGUCAUAACGUGAAAUGAGUUUGUUGUCGUAACAAGC ....((((((((..((((((....)))))))))))))).....((((((((...)))))))) ( -13.60, z-score = -1.22, R) >droSec1.super_4 3846503 62 - 6179234 AGAAUUAUGUUGAUUGGCAGCAAUUUGUCAUAACGUGAAAUGAGUUUGUUGUCGUAACAAGC ....((((((((..((((((....)))))))))))))).....((((((((...)))))))) ( -13.60, z-score = -1.22, R) >droSim1.chrX 3400372 62 + 17042790 AGAAUUAUGUUGAUUGGCAGCAAUUUGUCAUAACGUGAAAUGAGUUUGUUGUCGUAACAAGC ....((((((((..((((((....)))))))))))))).....((((((((...)))))))) ( -13.60, z-score = -1.22, R) >dp4.chrXL_group1a 5502537 62 - 9151740 AGAAUUAUGUUGAUUGGCAGCAAUUUGUCAUAACGUAAAAUGAGUUUGUUGUCGUAACAGGC .......(((((...((((((((....((((........))))..)))))))).)))))... ( -13.50, z-score = -1.46, R) >droPer1.super_11 2637902 62 - 2846995 AGAAUUAUGUUGAUUGGCAGCAAUUUGUCAUAACGUAAAAUGAGUUUGUUGUCGUAACAGGC .......(((((...((((((((....((((........))))..)))))))).)))))... ( -13.50, z-score = -1.46, R) >droWil1.scaffold_181150 1939356 62 + 4952429 AAAAUUAUGUUGAUUGGCAGCAGUUUGUCAUAACCUAAAAUGAGUUUGUUGUCGUAACAAGC .......(((((...((((((((....((((........))))..)))))))).)))))... ( -13.20, z-score = -1.63, R) >droGri2.scaffold_15203 5897078 62 - 11997470 AGAAUUAUGUUGAUUGGCAGCAAUUUGUCAUAACGUGAAAUUAGUUUGUUGCCGUAACAAGC .......(((((...((((((((....((((...)))).......)))))))).)))))... ( -15.40, z-score = -2.06, R) >droMoj3.scaffold_6359 4006683 62 + 4525533 AGAAUUAUGUUGAUUGGCAGCAAUUUGUCAUAACGUGAAAUUAGUUUGUUGUCGUAACAAGC ....((((((((..((((((....)))))))))))))).....((((((((...)))))))) ( -13.60, z-score = -1.49, R) >droVir3.scaffold_12928 5486457 62 + 7717345 AGAAUUAUGUUGAUUGGCAGCAAUUUGUCAUAACGUGAAAUUAGUUUGUUGUCGUAACAAGC ....((((((((..((((((....)))))))))))))).....((((((((...)))))))) ( -13.60, z-score = -1.49, R) >consensus AGAAUUAUGUUGAUUGGCAGCAAUUUGUCAUAACGUGAAAUGAGUUUGUUGUCGUAACAAGC ....((((((((..((((((....)))))))))))))).....((((((((...)))))))) (-13.50 = -13.25 + -0.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:14:52 2011