| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,391,211 – 4,391,308 |
| Length | 97 |
| Max. P | 0.886502 |
| Location | 4,391,211 – 4,391,308 |
|---|---|
| Length | 97 |
| Sequences | 8 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 73.09 |
| Shannon entropy | 0.51438 |
| G+C content | 0.49988 |
| Mean single sequence MFE | -34.03 |
| Consensus MFE | -9.74 |
| Energy contribution | -10.98 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.83 |
| Structure conservation index | 0.29 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.886502 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4391211 97 + 22422827 GUGCACAUCCGCGCAGAGUUGCCUACAAUUCAACUUCAGCCAAUUGAGUUGUGUCCACUGCACAC----UCAAGGGGCAA-GGAGGUUGAAGAGUGGGGAAU----- ((((......))))...(((.(((((..(((((((((.(((..((((((.((((.....))))))----))))..)))..-.)))))))))..))))).)))----- ( -44.10, z-score = -4.84, R) >droAna3.scaffold_13335 3280755 106 - 3335858 GUGUAGAGCUAUGCAGAGCUCAGUACAAUUCAACUUCAGCCAAUUGAGUUGUGUCCGAAGCGCACACAUCCAAGGGGCUGCAGGACUCCACGACUGCAGGACUGCC- (((..(((((......)))))..)))...........((((..(((.(.(((((.((...)).))))).))))..))))((((..((.((....)).))..)))).- ( -33.40, z-score = -0.57, R) >droEre2.scaffold_4690 1767782 97 + 18748788 GUGCACAUCCGCGCAGAGUUGACUACAAUUCAACUUCAGCCAAUUGAGUUGUGUCCACUGCACAC----UCAAGGGGCAG-GGAGGUUGAAGAGCGCUGGAU----- ......((((((((...((.....))..(((((((((.(((..((((((.((((.....))))))----))))..)))..-.)))))))))..)))).))))----- ( -39.70, z-score = -3.40, R) >droYak2.chrX 17723726 97 - 21770863 GUGCACAUCCGCGCACAGUUGACUACAAUUCAACUUCAGCCAAUUGAGUUGUGUCCACUGCACAC----UCAAGGGGCAA-GGAAGUUAAAGAGCGCAGGAU----- ......((((((((..(((((....))))).((((((.(((..((((((.((((.....))))))----))))..)))..-.)))))).....)))).))))----- ( -35.60, z-score = -3.64, R) >droSec1.super_4 3843464 97 - 6179234 GUGCACAUCCGCGCAGAGUUGCCUACAAUUCAACUUCAGCCAAUUGAGUUGUGUCCACUGCACAC----UCAAGGGGCAA-GGAGGUUGAAGAGUGAGGAAU----- ((((......)))).......(((((..(((((((((.(((..((((((.((((.....))))))----))))..)))..-.)))))))))..)).)))...----- ( -38.80, z-score = -3.59, R) >droSim1.chrX 3397280 97 + 17042790 GUGCACAUCCGCGCAGAGUUGCCUACAAUUCAACUUCAGCCAAUUGAGUUGUGUCCACUGCACAC----UCAAGGGGCAA-GGAGGUUGAAGAGUGAGGAAU----- ((((......)))).......(((((..(((((((((.(((..((((((.((((.....))))))----))))..)))..-.)))))))))..)).)))...----- ( -38.80, z-score = -3.59, R) >droPer1.super_11 2634242 94 - 2846995 -----------CGCAGAGUUUACAACAAUUCAACUUCAACCAAUUGAGUUGUGUCCAAUGCACACAC--ACAACAUUCGACAGAUACUGCGGCACAGAAGAGCGAGG -----------(((((.((((...(((((((((..........)))))))))(((.((((.......--....)))).))))))).)))))((........)).... ( -20.90, z-score = -1.53, R) >dp4.chrXL_group1a 5498829 94 - 9151740 -----------CGCAGAGUUUACAACAAUUCAACUUCAACCAAUUGAGUUGUGUCCAAUGCACACAC--ACAACAUUCGACAGAUACUGCGGCACAGAAGAGCGAGG -----------(((((.((((...(((((((((..........)))))))))(((.((((.......--....)))).))))))).)))))((........)).... ( -20.90, z-score = -1.53, R) >consensus GUGCACAUCCGCGCAGAGUUGACUACAAUUCAACUUCAGCCAAUUGAGUUGUGUCCACUGCACAC____UCAAGGGGCAA_GGAGGUUGAAGAGCGCAGGAU_____ ((((......)))).(((((......)))))..((...(((..(((...(((((.....)))))......)))..)))...))........................ ( -9.74 = -10.98 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:14:51 2011