| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,388,807 – 4,388,930 |
| Length | 123 |
| Max. P | 0.603682 |
| Location | 4,388,807 – 4,388,930 |
|---|---|
| Length | 123 |
| Sequences | 5 |
| Columns | 139 |
| Reading direction | reverse |
| Mean pairwise identity | 80.47 |
| Shannon entropy | 0.32265 |
| G+C content | 0.47255 |
| Mean single sequence MFE | -29.97 |
| Consensus MFE | -23.74 |
| Energy contribution | -24.14 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.603682 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4388807 123 - 22422827 AGUAACUCUGCUCUUUU--------UUUUUUUUUAAAGGACCCCAUCCCUUUUUCUUUGA--------GAACCCUCUCGAUCCGAACUCAUUCAGGCGGCACAAGCGGGCCUGAGCCUAAAUUUCUGAGUUCGAGCUUG .........((((....--------.........(((((........)))))....((((--------((....))))))...((((((((((((((.((....))..)))))))..........)))))))))))... ( -32.50, z-score = -1.69, R) >droSim1.chrX 3394908 131 - 17042790 AGUAACUCCGCUCUUUUUUUUUUUCUUUUUUGUUAUAGGACCCCUUCCCUUUUUCUUUGG--------GACCCCUCUCGAUCCGAACUCAUUCAGGCGGCACAAGCGGGCCUGAGCCUAAAUUUCUGAGUUCGAGCUUG .........((((........................(((.....((((.........))--------))..........)))((((((((((((((.((....))..)))))))..........)))))))))))... ( -30.86, z-score = -0.46, R) >droSec1.super_4 3841102 127 + 6179234 AGUAACUCCGCUCUUUUUUUU----UUUUUUGUUUUAGGACCCCUUCCCUUUUUCUUUGA--------GAACCCUCUCGAUCCGAACUCAUUCAGGCGGCACAAGCGGGCCUGAGCCUAAAUUUCUGAGUUCGAGCUUG .........((((........----............(((.....)))........((((--------((....))))))...((((((((((((((.((....))..)))))))..........)))))))))))... ( -31.20, z-score = -1.10, R) >droYak2.chrX 17721172 124 + 21770863 AGUAACCCCGCUCUUU---------------UUUAUAGGACCCCUUCCUUCCUUUUUUGUUUUUUCUUAAGACCCCUCGACACGAACUCAUUCAGGCGGCACAAGCAGACCUGAGCCUAAAAUUCUGAGUUCGAGCUUG .........((((...---------------.....((((.....)))).........(((((.....)))))..........((((((((((((((.((....)).).))))))..........)))))))))))... ( -26.30, z-score = -1.39, R) >droEre2.scaffold_4690 1765178 118 - 18748788 AGCAACCCCGCUCUUU--------------CUUUAUAGGACCCCUUCCUUCUUUCAUGAUCC-------GAACCCCUCGAUCCGAACUCAUUCAGCCGGCACAAGCGGGCCAGAGCCUAAAUUUGUGAGUUCGAGCUUG .........((((...--------------......((((.....))))........((((.-------((.....)))))).(((((((....(((.((....)).)))((((.......)))))))))))))))... ( -29.00, z-score = -1.23, R) >consensus AGUAACUCCGCUCUUUU________UUUUUUUUUAUAGGACCCCUUCCCUUUUUCUUUGA________GAACCCUCUCGAUCCGAACUCAUUCAGGCGGCACAAGCGGGCCUGAGCCUAAAUUUCUGAGUUCGAGCUUG .........((((........................(((.....)))...................................((((((((((((((.((....)).).))))))..........)))))))))))... (-23.74 = -24.14 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:14:50 2011