| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,387,664 – 4,387,764 |
| Length | 100 |
| Max. P | 0.927753 |
| Location | 4,387,664 – 4,387,764 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 67.02 |
| Shannon entropy | 0.56221 |
| G+C content | 0.42991 |
| Mean single sequence MFE | -21.80 |
| Consensus MFE | -12.44 |
| Energy contribution | -12.48 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.33 |
| SVM RNA-class probability | 0.927753 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4387664 100 - 22422827 GCAAGGUCACACUGUUCAUUCGCCCAGUGUGGCCUGUUUCCUAUAAAAAGCAUUAUGUCAAAUAUGACACACACGCUUAAUUGUAGCUUAGCUUUGUUAU ((.(((((((((((..(....)..))))))))))).....((((((.((((....(((((....))))).....))))..))))))....))........ ( -30.30, z-score = -3.75, R) >droEre2.scaffold_4690 1764063 83 - 18748788 GCAGGGUCAAACUAUUUACUCGCCAGGUGUGGCCGCCUUCCAACAAAAAGCAUAA---------------CCAGGCUCAAUCUGAGCAUAGUUUUGAU-- .....((((((((((......(((((((..((((.....................---------------...))))..))))).)))))).))))))-- ( -16.76, z-score = 0.54, R) >droYak2.chrX 17720067 96 + 21770863 GCAGGGUCACACCGUUUAUGCGCCAGGUGUGGCCUGUUUCCUAAAAAAAGGAUAA-UGUUUAAUAGAUACCCAGACUCAAUUU-AGCUUAGUUUUGAU-- ((.((((((((((............))))))))))...((((......))))...-...........................-.))...........-- ( -22.40, z-score = -0.73, R) >droSec1.super_4 3839983 78 + 6179234 GCAGGGUCACACUGUUUACUCGCCCAGUGUGGUCUGUUUCCUUUAAAAAGC----------AAAUGACACACAAGCUUAAUUGUAGCU------------ ((.((..(((((((..........)))))))..))............((((----------.............)))).......)).------------ ( -17.52, z-score = -0.34, R) >droSim1.chrX 3393788 80 - 17042790 GCAGGGUCACACUGUUCACUCGCCCAGUGUGGUCUGUUUCCUUUAAAAAGC----------AAAUGACACCCAAACAUAAUUGUAGCUUA---------- ((.(((((((((((..(....)..)))))))(((.((((.(((....))).----------)))))))))))..(((....))).))...---------- ( -22.00, z-score = -2.38, R) >consensus GCAGGGUCACACUGUUUACUCGCCCAGUGUGGCCUGUUUCCUAUAAAAAGCAU_A______AAAUGACACCCAAGCUUAAUUGUAGCUUAG_UUUG_U__ ...(((((((((((..........)))))))))))................................................................. (-12.44 = -12.48 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:14:49 2011