| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,357,667 – 4,357,761 |
| Length | 94 |
| Max. P | 0.560252 |
| Location | 4,357,667 – 4,357,761 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 74.32 |
| Shannon entropy | 0.47572 |
| G+C content | 0.42692 |
| Mean single sequence MFE | -20.56 |
| Consensus MFE | -12.72 |
| Energy contribution | -13.44 |
| Covariance contribution | 0.73 |
| Combinations/Pair | 1.41 |
| Mean z-score | -0.98 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.560252 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chrX 4357667 94 + 22422827 -----CACCGGAGUAG---CACACAUAUUUGAUGAACUUUUGAUUGCUGACCAGGCACACUU-U-GGAACACUAUAAUUUCGAUGGUCGGCUCUGAAGUUCUGG -----..((((((((.---......)))))...(((((((.((..((((((((.........-(-((....))).........)))))))))).)))))))))) ( -23.17, z-score = -1.42, R) >droSim1.chrX 3364367 94 + 17042790 -----CCCCGGAGUAG---CACACAUAUUUGAUGAACUUUUGAUUGCUGACCAGGCACACUU-U-GGAACACUAUAAUUUCGAUGGUCAGCUCUGAAGUUCUGG -----..((((((((.---......)))))...(((((((.((..((((((((.........-(-((....))).........)))))))))).)))))))))) ( -23.67, z-score = -1.36, R) >droSec1.super_4 3810342 95 - 6179234 -----CCCCGGAGUAG---CACACAUAUUUGAUGAACUUUUGAUUGCUGACCAGGCACACUU-UUGGAACACUAUAAUUUCGAUGGUCAGCUCUGAAGUUGUGG -----...........---(((.(((.....)))((((((.((..(((((((((.....)..-((((((........)))))))))))))))).))))))))). ( -21.70, z-score = -0.45, R) >droYak2.chrX 17690537 96 - 21770863 -----CCCCAGAGUAGUA-CACACAUAUUUGAUGAACUUUUGAUUGCUGACCAGGCACACUU-U-UGAACACUAUAAUUUCGAUGGUCAGCUCUGGAGUUCUUG -----...((((...((.-...))...))))..((((((..((..(((((((((.....)..-(-((((.........)))))))))))))))..))))))... ( -21.60, z-score = -1.13, R) >droEre2.scaffold_4690 1733676 94 + 18748788 -----CCCCCGAGUAG---CACACAUAUUUGAUGAACUUUUGAUUGCUGACCAGGCACACUU-U-UGAACACUAUAAUUUCGAUGGUCAACACUGAAGUUCUAG -----....((((((.---......))))))..(((((((....((.(((((((.....)..-(-((((.........))))))))))).))..)))))))... ( -17.30, z-score = -0.97, R) >droAna3.scaffold_13335 3239547 104 - 3335858 CCCUUCACAAUCAUAGCUCUUUACCCAAUAAAUGUAAUCUUUUCCUUUGGCCGUUUAAACCCAUCAAUAGGUCAUGCCAUCGGUGGGUUCUACCCAAUUUUUUU ..............................................((((..((...((((((((.((.((.....)))).))))))))..))))))....... ( -15.90, z-score = -0.53, R) >consensus _____CCCCGGAGUAG___CACACAUAUUUGAUGAACUUUUGAUUGCUGACCAGGCACACUU_U_GGAACACUAUAAUUUCGAUGGUCAGCUCUGAAGUUCUGG .................................(((((((.((..((((((((..............................)))))))))).)))))))... (-12.72 = -13.44 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:14:46 2011