| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,329,790 – 4,329,884 |
| Length | 94 |
| Max. P | 0.665367 |
| Location | 4,329,790 – 4,329,884 |
|---|---|
| Length | 94 |
| Sequences | 12 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 80.52 |
| Shannon entropy | 0.38211 |
| G+C content | 0.40258 |
| Mean single sequence MFE | -19.04 |
| Consensus MFE | -13.83 |
| Energy contribution | -13.94 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.665367 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4329790 94 - 22422827 -----------------UUCUCUUUGAUCUGCCAUCGCACAUCUAGGAAAUGUUUGUCAAAUUCAUUCGACCGUUCUCAUUGUUUUUGACAUUUCUUUUAGUCUUCGCAGU-------- -----------------...((((.(((.(((....))).))).))))......(((((((..((...((......))..))..)))))))....................-------- ( -14.90, z-score = -0.67, R) >droPer1.super_11 2564816 91 + 2846995 ----------UGUCGCCAUCUCUUUGAUCUGCCAGCGUACAUCUAGGAAAUGUUUGUCAAAUCCAUUCGACCGUUCUCAUUGUUUUUGACAUUUCUUUUAG------------------ ----------......(((.((((.(((.(((....))).))).)))).)))..(((((((..((...((......))..))..)))))))..........------------------ ( -15.10, z-score = -0.86, R) >dp4.chrXL_group1a 5430193 91 + 9151740 ----------UGUCGCCAUCUCUUUGAUCUGCCAGCGUACAUCUAGGAAAUGUUUGUCAAAUCCAUUCGACCGUUCUCAUUGUUUUUGACAUUUCUUUUAG------------------ ----------......(((.((((.(((.(((....))).))).)))).)))..(((((((..((...((......))..))..)))))))..........------------------ ( -15.10, z-score = -0.86, R) >droAna3.scaffold_13335 3209813 111 + 3335858 UCUGCCGACGUCGGCAGAUCCCUUUGAUCUGCCAGCGCACAUCUAGGAAAUGUUUGUCAAAUCCACUCGACCGUUUUCAUUGUUUUUGACAUUUCUUUUAGUCCCCGCUGC-------- (((((((....)))))))..............(((((.....((((((......(((((((..((...((......))..))..)))))))....))))))....))))).-------- ( -29.50, z-score = -2.65, R) >droEre2.scaffold_4690 1705835 94 - 18748788 -----------------UUCUCUUUGAUCUGCCAUCGCACAUCUAGGAAAUGUUUGUCAAAUUCAUUCGACCGUUCUCAUUGUUUUUGACAUUUCUUUUAGACUUCGCUGU-------- -----------------...((((.(((.(((....))).))).))))......(((((((..((...((......))..))..)))))))....................-------- ( -14.90, z-score = -0.43, R) >droYak2.chrX 17662504 94 + 21770863 -----------------UUUCCUUUGAUCUGCCAUCGCACAUCUAGGAAAUGUUUGUCAAAUUCAUUCGACCGUUCUCAUUGUUUUUGACAUUUCUUUUAGUCUUCGCUGU-------- -----------------((((((..(((.(((....))).))).))))))....(((((((..((...((......))..))..))))))).......((((....)))).-------- ( -18.60, z-score = -2.30, R) >droSec1.super_4 3782585 94 + 6179234 -----------------UUCUCUUUGAUCUGCCAUCGCACAUCUAGGAAAUGUUUGUCAAAUUCAUUCGACCGUUCUCAUUGUUUUUGACAUUUCUUUUAGUCUUCGCAGU-------- -----------------...((((.(((.(((....))).))).))))......(((((((..((...((......))..))..)))))))....................-------- ( -14.90, z-score = -0.67, R) >droSim1.chrX 3337559 94 - 17042790 -----------------UUCUCUUUGAUCUGCCAUCGCACAUCUAGGAAAUGUUUGUCAAAUUCAUUCGACCGUUCUCAUUGUUUUUGACAUUUCUUUUAGUCUUCGCAGU-------- -----------------...((((.(((.(((....))).))).))))......(((((((..((...((......))..))..)))))))....................-------- ( -14.90, z-score = -0.67, R) >droWil1.scaffold_181150 2937588 94 + 4952429 ----------------UCGCUCUUUGAUCUGCCAGCGCACAUCUAGGAAAUGUUUGUCAAAUUCAUUGGACCGUUCUCAUUGUUUUUGACAUUUCUUUUA-CCAUCGCAUU-------- ----------------..((((((.(((.(((....))).))).))))......(((((((..((.((((....)).)).))..))))))).........-.....))...-------- ( -19.70, z-score = -1.70, R) >droVir3.scaffold_12928 5364186 101 - 7717345 -----------------CCUUCUUUGAUCUGCCAGCGCACAUCUAGGAAAUGUUUGUCAAAUUCAUUGGACCGUUCUCAUUCUUUUUGACAUUUCUUUUUAGCCGAACGC-GACGUCGG -----------------..(((((.(((.(((....))).))).))))).....(((((((.....((((....)).)).....)))))))...........((((.((.-..)))))) ( -18.30, z-score = 0.19, R) >droMoj3.scaffold_6359 3904538 101 - 4525533 -----------------CCUUCUUUGAUCUGCCAGCGCACAUCUAGGAAAUGUUUGUCAAAUUCAUUGGACCGUUCUCAUUGUUUUUGACAUUUCUUUUUAGCCGAAUGC-GGCGUCGU -----------------..(((((.(((.(((....))).))).))))).....(((((((..((.((((....)).)).))..)))))))..........((((....)-)))..... ( -25.00, z-score = -1.54, R) >droGri2.scaffold_15203 5816996 101 + 11997470 -----------------CCUUCUUUGAUCUGCCAGCGCACAUCUAGGAAAUGUUUGUCAAAUUCAUUGGACCGUUCUCAUUGUUUUUGACAUUUC-UUUUAGCCGAACGCUGGCGCUGC -----------------.............(((((((.....((((((......(((((((..((.((((....)).)).))..)))))))....-)))))).....)))))))..... ( -27.60, z-score = -2.20, R) >consensus _________________UUCUCUUUGAUCUGCCAGCGCACAUCUAGGAAAUGUUUGUCAAAUUCAUUCGACCGUUCUCAUUGUUUUUGACAUUUCUUUUAGUCUUCGCAGU________ ....................((((.(((.(((....))).))).))))......(((((((..((...((......))..))..)))))))............................ (-13.83 = -13.94 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:14:43 2011