| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,322,504 – 4,322,623 |
| Length | 119 |
| Max. P | 0.596210 |
| Location | 4,322,504 – 4,322,623 |
|---|---|
| Length | 119 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 91.70 |
| Shannon entropy | 0.18780 |
| G+C content | 0.54905 |
| Mean single sequence MFE | -43.03 |
| Consensus MFE | -32.91 |
| Energy contribution | -33.03 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.596210 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4322504 119 - 22422827 AUUGUUGCUA-CCCGCCGUCAACAGCGAGGAAACGCUGAAGUCAGUGGGUCGUUGCGUUAGCUGCAGAAAUGGAUGAUAUGCCAUCCCAUUGGCGAACCUGGCGAAUGGAUCCUCAGCAG ...((.((.(-(((((.(.(..(((((......)))))..).).)))))).)).))....((((.((....(((((......)))))((((.((.......)).))))....)))))).. ( -40.70, z-score = -1.20, R) >droAna3.scaffold_13335 3200135 119 + 3335858 GUUGUUGUUA-CCCGCCGUCAACAGCGAGGAGACGCUGAAGUCAGUGGGUCGUUGCGUUAGCUGCAGAAAUGGAUGAUAUGCCAUCCCAUUGGCGAACCUGGCGAAAGGAUCCUCGGCAG (((((((...-........)))))))..(....)(((((.(((((((((..((.((....)).))....((((........)))))))))))))((.(((......))).)).))))).. ( -39.90, z-score = -0.61, R) >droEre2.scaffold_4690 1698711 119 - 18748788 AUUGUUGCUA-CCCGCCGUCAACAGCGAGGAAACGCUGAAGUCAGUGGGUCGUUGCGUUAGCUGCAGAAAUGGAUGAUAUGCCAUCCCAUUGGCGAACCUGGCGAAUGGAUCCUCAGCAG ...((.((.(-(((((.(.(..(((((......)))))..).).)))))).)).))....((((.((....(((((......)))))((((.((.......)).))))....)))))).. ( -40.70, z-score = -1.20, R) >droYak2.chrX 17655277 119 + 21770863 AUUGUUGCUA-CCCGCCGUCAACAGCGAGGAAACGCUGAAGUCAGUGGGUCGUUGCGUUAGCUGCAGAAAUGGAUGAUAUGCCAUCCCAUUGGCGAACCUGGCGAAUGGAUCCUCAGCAG ...((.((.(-(((((.(.(..(((((......)))))..).).)))))).)).))....((((.((....(((((......)))))((((.((.......)).))))....)))))).. ( -40.70, z-score = -1.20, R) >droSec1.super_4 3775431 119 + 6179234 AUUGUUGCUA-CCCGCCGUCAACAGCGAGGAAACGCUGAAGUCAGUGGGUCGUUGCGUUAGCUGCAGAAAUGGAUGAUAUGCCAUCCCAUUGGCGAACCUGGCGAAUGGAUCCUCAGCAG ...((.((.(-(((((.(.(..(((((......)))))..).).)))))).)).))....((((.((....(((((......)))))((((.((.......)).))))....)))))).. ( -40.70, z-score = -1.20, R) >droWil1.scaffold_181150 2926902 119 + 4952429 GCUGUUGCUA-CCCGCCGUCAACAGCGACGAGACGCUGAAGUCAGUGGGUCUUUGCGAUAGCUGCAGAAAUGGAUGAUAUGCCAUCCCAUUUGCAAACCUAGCGAAUGGAUCCUCAGCAG ((((((((.(-(((((.(.(..(((((......)))))..).).))))))....))))))))(((......(((((......)))))(((((((.......)))))))........))). ( -46.50, z-score = -3.80, R) >droPer1.super_11 2556251 119 + 2846995 GUUGUUGCUA-CCCGCCGUCAACAGCGAGGAUACGCUGAAGUCAGUGGGUCUUUGCGUUAGCUGCAGAAAUGGAUGAUAUGCCAUCCCAUUUGCGAACCUGGCGAAUGGAUCCUCAGCAG ((((...(((-..(((((..(((.(((((((..(((((....)))))..))))))))))..)((((((...(((((......)))))..)))))).....))))..))).....)))).. ( -44.80, z-score = -2.71, R) >dp4.chrXL_group1a 5421630 119 + 9151740 GUUGUUGCUA-CCCGCCGUCAACAGCGAGGAUACGCUGAAGUCAGUGGGUCUUUGCGUUAGCUGCAGAAAUGGAUGAUAUGCCAUCCCAUUUGCGAACCUGGCGAAUGGAUCCUCAGCAG ((((...(((-..(((((..(((.(((((((..(((((....)))))..))))))))))..)((((((...(((((......)))))..)))))).....))))..))).....)))).. ( -44.80, z-score = -2.71, R) >droVir3.scaffold_12928 5353497 119 - 7717345 GCUGUUGCUG-CCCGCCGUCAACAGCGACGAGACGCUGAAGUCAGUGGGUCUUUGCGAGAGCUGCAGAAAUGGAUGAUAUGCCAUCCCAUUUGCGAACCUGGCGAAUGGAUCCUCAGCAG (((.((((.(-(((((.(.(..(((((......)))))..).).))))))....)))).)))(((......(((((......)))))(((((((.......)))))))........))). ( -44.90, z-score = -2.08, R) >droMoj3.scaffold_6359 3893281 119 - 4525533 GCUGUUGCUA-CCCGCCGUCAACAGCGACGAGACGCUGAAGUCAGUGGGUCUUUGCGAGAGCUGCAGAAAUGGAUGAUAUGCCAUCCCAUUUGCGAACCUGGCGAAUGGAUCCUCAGCAG (((.((((.(-(((((.(.(..(((((......)))))..).).))))))....)))).)))(((......(((((......)))))(((((((.......)))))))........))). ( -44.60, z-score = -2.42, R) >droGri2.scaffold_15203 5806865 119 + 11997470 GUUGUUGCUA-CCCGCCGUCAACAGCGACGAGACGCUGAAGUCAGUGGGUCUUUGCGAGAGCUGCAGAAAUGGAUGAUAUGCCAUCCCAUUUGCGAACCUGGCGAAUGGAUCCUCAGCAG ..(.((((.(-(((((.(.(..(((((......)))))..).).))))))....)))).)((((.((....(((((......)))))(((((((.......)))))))....)))))).. ( -42.20, z-score = -1.92, R) >anoGam1.chr3L 31177620 111 - 41284009 ACGGCGGCGAGCCCGCGGUCAACAGCGACGAGACGCUGAAGUCAGUCGGUC---GCGGUAGCUGCAGGAAUGGAUGAUAGGCCAUUCCCUUCGCCGGCCUACUGAA---GUCGUCAG--- .(((((((.((((((((..(..(((((......)))))..(.....))..)---))))..))))).(((((((........)))))))...))))).....((((.---....))))--- ( -45.90, z-score = -1.07, R) >consensus GUUGUUGCUA_CCCGCCGUCAACAGCGAGGAGACGCUGAAGUCAGUGGGUCUUUGCGUUAGCUGCAGAAAUGGAUGAUAUGCCAUCCCAUUUGCGAACCUGGCGAAUGGAUCCUCAGCAG ......((...(((((.(.(..(((((......)))))..).).))))).....))....((((..((...(((((......)))))((((.((.......)).))))..))..)))).. (-32.91 = -33.03 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:14:42 2011