| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,313,635 – 4,313,748 |
| Length | 113 |
| Max. P | 0.872054 |
| Location | 4,313,635 – 4,313,748 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 82.30 |
| Shannon entropy | 0.33758 |
| G+C content | 0.34926 |
| Mean single sequence MFE | -25.99 |
| Consensus MFE | -12.97 |
| Energy contribution | -15.05 |
| Covariance contribution | 2.08 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.58 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.872054 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4313635 113 - 22422827 UGCACUGCACUUUAUUUGAUCGAUAAAUAAACCAAGAGAAAUAUU--AGAAAGCCAUUUUCAGCUUGUUCUGUUAAUUAAACGAGCAUUUUCCACUUUCGAUUUGAGUGCAGGCC .((.((((((((.....((((((............(((((.....--.........))))).(((((((..........)))))))...........)))))).)))))))))). ( -27.74, z-score = -2.88, R) >droSim1.chrX 3322775 112 - 17042790 UGC-CUGCACUUUAUUUGAUCGAUAAAUAAACCAAGAGAAAUAUU--AGAAAGCAAUUUUCAGCUAGUUCUGUUAAUUAAACGAGCAUUUUCCACUUUCGAUUUGAGUGCAGGCC .((-((((((((.....((((((......................--....(((........))).((((.(((.....)))))))...........)))))).)))))))))). ( -30.00, z-score = -3.74, R) >droSec1.super_4 3766866 112 + 6179234 UGC-CUGCACUUUAUUUGAUCGAUAAAUAAACCAAGAGAAAUAUU--AGAAAGCAAUUUUCAGCUAGUUCUGUUAAUUAAACGAGCAUUUUCCACUUUCGAUUUGAGUGCAGGCC .((-((((((((.....((((((......................--....(((........))).((((.(((.....)))))))...........)))))).)))))))))). ( -30.00, z-score = -3.74, R) >droYak2.chrX 17645988 112 + 21770863 UGC-UUGCACUUUAUUUGAUCGAUAAAUAAACCAAGAUGAAUAUU--AGAAAGCAAUUUGCAGUUAGUUCUGUUAAUUAAACGAGCAUUUUCCACUUUCGAUUUGAGUGCAGGCC .((-((((((((.....((((((......................--.....((.....)).....((((.(((.....)))))))...........)))))).)))))))))). ( -26.90, z-score = -2.39, R) >droEre2.scaffold_4690 1689936 112 - 18748788 AGC-UUGCACUUUAUUUGAUCGAUAAAUAAGCCAAGAGGAAUAUU--AGAAAGCAAUUUCCAGUCAGUUGUGUUAAUUAAACGAGCAUAUUCCACUUUCGAUUUGAGUGCAGGCC .((-((((((((.....((((((..........(((.(((((((.--.((((....))))......(((.((((.....)))))))))))))).))))))))).)))))))))). ( -32.10, z-score = -3.95, R) >droAna3.scaffold_13335 3187207 103 + 3335858 ----AGCCACUUGAUUUGAUCGAUAAAUAAGCCAAUAGAAAUUUUCCAGAUAGUUCUCUUAAUUAAUUUGUACUCGUUUUCCGUUCAUUUUCCA--AUCGAAGCCAGCU------ ----(((..(((((((.((..((.....((((...((.(((((....(((......))).....))))).))...)))).....))....)).)--))).)))...)))------ ( -9.20, z-score = 1.22, R) >consensus UGC_CUGCACUUUAUUUGAUCGAUAAAUAAACCAAGAGAAAUAUU__AGAAAGCAAUUUUCAGCUAGUUCUGUUAAUUAAACGAGCAUUUUCCACUUUCGAUUUGAGUGCAGGCC .((.((((((((.....((((((.........................((((....))))..(((.(((..........))).)))...........)))))).)))))))))). (-12.97 = -15.05 + 2.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:14:41 2011