Locus 13101

Sequence ID dm3.chrX
Location 4,306,883 – 4,306,995
Length 112
Max. P 0.507979
window18009

overview

Window 9

Location 4,306,883 – 4,306,995
Length 112
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.63
Shannon entropy 0.17933
G+C content 0.44952
Mean single sequence MFE -25.22
Consensus MFE -17.63
Energy contribution -17.35
Covariance contribution -0.28
Combinations/Pair 1.10
Mean z-score -2.04
Structure conservation index 0.70
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.03
SVM RNA-class probability 0.507979
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 4306883 112 - 22422827
UUCUUUGAGUGAAAUCCCUCUGUG--------CGUUUUAAACCCACGUACACCCCUGGAUUUUCCGCUGUGAUCUCCGCUCUUCGUUUCAUAUGAAGUGUCGACGUUUACUAACAGAAUU
...((((((((((((((...((((--------(((.........))))))).....))))))..))))((((.(((.((.((((((.....)))))).)).)).).))))...))))... ( -25.90, z-score =  -2.53, R)
>droEre2.scaffold_4690 1683266 120 - 18748788
UUCGUUGAGUGAAACCCCUCUGUGUACUGUCCUAUUCAAAACCCACCUACACCCCUGGUUUUUCCGCUGUGAUCUCCGCUCUUCGUUUCAUAUGAGGUGUCGACGUUUACUAACAGAAUU
...(((((((((((..((...(((((.....................)))))....))..))).))))((((.(((.((.((((((.....)))))).)).)).).))))))))...... ( -20.50, z-score =   0.01, R)
>droYak2.chrX 17639396 120 + 21770863
UUUUCUGAGCGAAACCCCUCUGUGUUGUGUCUUGUUGAAAACCCACCUACACCCCUGGUAUUUCCGCUGUGAUCUCCGCUCUUCGUUUCAUAUGAAGUGUCGACGUUUACUAACAGAAUU
..((((((((((((..((...((((.(((..((......))..)))..))))....))..))).))))((((.(((.((.((((((.....)))))).)).)).).))))...))))).. ( -29.90, z-score =  -3.57, R)
>droSec1.super_4 3760318 112 + 6179234
UUCUUUGAGUGAAAUCCCUCUGUG--------CGUUCAAAACCCACGUACACCCCUGGAUUUUCCGCUGUGAUCUCCGCUCUUCGUUUCAUAUGAAGUGUCGACGCUUACUAACAGAAUU
...((((((((((((((...((((--------(((.........))))))).....))))))..))))((((.(((.((.((((((.....)))))).)).)).).))))...))))... ( -25.80, z-score =  -2.34, R)
>droSim1.chrX 3315047 112 - 17042790
UUCUUUGAGUGAAAUCCCUCUGUG--------CGUUUAAAACCCACGUACACCCCUGGACUUUCCGCUGUGAUCUCCGCUCUUCGUUUCAUAUGAAGUGUCGACGUUUACUAACAGAAUU
...((((((((((((((...((((--------(((.........))))))).....))).))).))))((((.(((.((.((((((.....)))))).)).)).).))))...))))... ( -24.00, z-score =  -1.78, R)
>consensus
UUCUUUGAGUGAAAUCCCUCUGUG________CGUUCAAAACCCACGUACACCCCUGGAUUUUCCGCUGUGAUCUCCGCUCUUCGUUUCAUAUGAAGUGUCGACGUUUACUAACAGAAUU
...(((((((((((..((...(((.........................)))....))..))).))))((((.(((.((.((((((.....)))))).)).)).).))))...))))... (-17.63 = -17.35 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:14:39 2011