| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,306,559 – 4,306,653 |
| Length | 94 |
| Max. P | 0.843240 |
| Location | 4,306,559 – 4,306,653 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 88.36 |
| Shannon entropy | 0.19369 |
| G+C content | 0.44310 |
| Mean single sequence MFE | -24.30 |
| Consensus MFE | -22.42 |
| Energy contribution | -21.54 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.843240 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4306559 94 - 22422827 GAUAACAACACGCCGGAUAACUCACGCACAUUCGAAUCGCAUCCUUUGACUUCUUGGGAAAAAAGGACAACGGCUUAACCGUUAAAUGUGUGUG-------------- ......................((((((((((.........((((((...(((....))).)))))).(((((.....))))).))))))))))-------------- ( -23.20, z-score = -1.95, R) >droSim1.chrX 3314725 94 - 17042790 GAUAACAACACGCCGGAUAACUCACGCAUAUUCGAAUCGCAUCCUUUGACUCCUUGGGAAAAAAGGACAGCGGCUUAACCGUUAAAUGUGUGUG-------------- ......................((((((((((.........((((((...(((...)))..)))))).(((((.....))))).))))))))))-------------- ( -22.20, z-score = -1.11, R) >droSec1.super_4 3759995 94 + 6179234 GAUAACAACACGCCGGAUAACUUACGCAUAUUCGAAUCGCAUCCUUUGAAUCCUUGGGAAAAAAGGACAGCGGCUGAACCGUUAAAUGUGUGUG-------------- .......((((((((((((.........))))))..((((.((((((...(((...)))..))))))..))))..............)))))).-------------- ( -21.70, z-score = -0.91, R) >droYak2.chrX 17639041 108 + 21770863 GAUAACAACACGCCGGAUAACUCACGCAUAUUCGAAUCGCAUUCUUUGACUCCUUGGGAAAAAAGGACAACGGUUAAACCGUUUAAUGUGUGUGUGUGUAGGUGCGAC ........(.((((.....((.((((((((((.........((((((...(((...)))..)))))).(((((.....))))).)))))))))).))...)))).).. ( -29.20, z-score = -1.20, R) >droEre2.scaffold_4690 1682942 100 - 18748788 GAUAACAACACGCCGGAUAACUCACGCAUAUUCGAAUCGCAUCCUUUGACUCCUUAGGAAAAAAGGACAACGGUUAAACCGUUAAAUGUGUGUGUAUGUG-------- ....(((((((((((((((.........))))))....(((((((((...(((...)))..)))))).(((((.....)))))...))))))))).))).-------- ( -25.20, z-score = -1.94, R) >consensus GAUAACAACACGCCGGAUAACUCACGCAUAUUCGAAUCGCAUCCUUUGACUCCUUGGGAAAAAAGGACAACGGCUAAACCGUUAAAUGUGUGUG______________ ......................((((((((((.........((((((...(((...)))..)))))).(((((.....))))).)))))))))).............. (-22.42 = -21.54 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:14:39 2011