Locus 1310

Sequence ID dm3.chr2L
Location 10,095,406 – 10,095,498
Length 92
Max. P 0.867819
window1789

overview

Window 9

Location 10,095,406 – 10,095,498
Length 92
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 89.92
Shannon entropy 0.17259
G+C content 0.51221
Mean single sequence MFE -30.48
Consensus MFE -27.92
Energy contribution -28.36
Covariance contribution 0.44
Combinations/Pair 1.03
Mean z-score -1.54
Structure conservation index 0.92
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.99
SVM RNA-class probability 0.867819
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 10095406 92 + 23011544
-AUCGGAUGGGGCUAGCUGGCGGAAUGGCCAUGGAAGGGUCCGAAUUGUUCUAUGU-------AGCAGUUGGCAUUUGGAAAACGCAUAGUUGGCUUCAC
-......(((((((((((((((.....(((.((((....))))(((((((......-------))))))))))..((....))))).)))))))))))). ( -30.10, z-score =  -1.74, R)
>droSim1.chr2L 9883970 92 + 22036055
-AAUGGAUGGGGCUAGCUGGCGGAAUGGCCAUGGAAGGGUCCGAAUUGUUUCAUGU-------AGCAGUUGGCAUUUGGAAAACGCAUAGUUGGCUUCAG
-......(((((((((((((((.....(((.((((....))))(((((((......-------))))))))))..((....))))).)))))))))))). ( -31.20, z-score =  -2.26, R)
>droSec1.super_3 5533423 92 + 7220098
-GUUGGAUGGGGCUAGCUGGCGGAAUGGCCAUGGAAGGGUCCGAAUUGUUCCAUGU-------AGCAGUUGGCAUUUGGAAAACGCAUAGUUGGCUUCAC
-......(((((((((((((((.......(((((((.(((....))).))))))).-------.((.....))..........))).)))))))))))). ( -31.30, z-score =  -1.67, R)
>droYak2.chr2L 12779364 100 + 22324452
AGAGGAAUGGGGCUAACUGGCGGAAUGGCCAUGAAAGGGUCCGAAUUGUUCCAUGUUCCAUGUAGCAGUUGGCAUUUGGAAAACGCAUAGUUGGCUUCAC
.......(((((((((((((((((((((((.......))))......)))))...(((((.((.((.....)))).)))))...)).)))))))))))). ( -32.60, z-score =  -1.67, R)
>droEre2.scaffold_4929 10710816 91 + 26641161
-AGCGGAUGGGG-UAGCUGGCGGAAUGGCCAUGGAAGGGUCCGAAUUGUUCUGUGU-------ACCAGUUGGCAUGUGGAAAACGCAUAGUUGGCUUCAC
-(((.(((..(.-((((((((((((..(...((((....))))..)..)))))...-------.))))))).)(((((.....))))).))).))).... ( -27.20, z-score =  -0.33, R)
>consensus
_AACGGAUGGGGCUAGCUGGCGGAAUGGCCAUGGAAGGGUCCGAAUUGUUCCAUGU_______AGCAGUUGGCAUUUGGAAAACGCAUAGUUGGCUUCAC
.......(((((((((((((((......((......)).(((((((.(((...(((........)))...))))))))))...))).)))))))))))). (-27.92 = -28.36 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:29:31 2011