| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,300,828 – 4,300,888 |
| Length | 60 |
| Max. P | 0.829706 |
| Location | 4,300,828 – 4,300,888 |
|---|---|
| Length | 60 |
| Sequences | 11 |
| Columns | 72 |
| Reading direction | forward |
| Mean pairwise identity | 83.18 |
| Shannon entropy | 0.33171 |
| G+C content | 0.43091 |
| Mean single sequence MFE | -13.35 |
| Consensus MFE | -10.50 |
| Energy contribution | -10.50 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.829706 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chrX 4300828 60 + 22422827 -------CACCGACGCAAUGUGCCGUAAAAAUAAUUAUGGCUGC-AACUGCACAAUUUUCCUGGCAAA---- -------.......(((.((((((((((......))))))).))-)..))).................---- ( -12.60, z-score = -0.63, R) >droSec1.super_4 3754579 59 - 6179234 -------CACCGACGCAAUGUGCCGUAAAAAUAAUUAUGGCUGC-AACUGCACAAUUUUCCUGGCAA----- -------.......(((.((((((((((......))))))).))-)..)))................----- ( -12.60, z-score = -0.65, R) >droYak2.chrX 17632977 59 - 21770863 -------CACCGACGCAAUGUGCCGUAAAAAUAAUUAUGGCUGC-AACUGCACAAUUUUCCUAGCAA----- -------.......(((.((((((((((......))))))).))-)..)))................----- ( -12.60, z-score = -1.28, R) >droEre2.scaffold_4690 1675620 58 + 18748788 -------CACCGACGCAAUGUGCCGUAAAAAUAAUUAUGGCUGC-AACUGCACAAUUUUCCUAGCA------ -------.......(((.((((((((((......))))))).))-)..)))...............------ ( -12.60, z-score = -1.22, R) >droAna3.scaffold_13335 3172114 59 - 3335858 -------CACCGACGCAAUGUGCCGUAAAAAUAAUUAUGGCUGC-AACUGCACAAUUUUCCUACCAA----- -------.......(((.((((((((((......))))))).))-)..)))................----- ( -12.60, z-score = -2.07, R) >dp4.chrXL_group1a 5393657 53 - 9151740 -------CACCGACGCAAUGUGCCGUAAAAAUAAUUAUGGCUGC-AACUGCACAAUUUUCC----------- -------.......(((.((((((((((......))))))).))-)..)))..........----------- ( -12.60, z-score = -2.08, R) >droPer1.super_11 2528290 53 - 2846995 -------CACCGACGCAAUGUGCCGUAAAAAUAAUUAUGGCUGC-AACUGCACAAUUUUCC----------- -------.......(((.((((((((((......))))))).))-)..)))..........----------- ( -12.60, z-score = -2.08, R) >droWil1.scaffold_181150 2901155 52 - 4952429 -------CCCCAACGCAAUGUGCCGUAAAAAUAAUUAUGGCUGC-AACUGCACAAUUUCC------------ -------.......(((.((((((((((......))))))).))-)..))).........------------ ( -12.60, z-score = -2.54, R) >droVir3.scaffold_12928 5320211 72 + 7717345 UUGCCUACUGCGACGCAAUGUGCCGUAAAAAUAAUUAUGGCUGCAAACUGCACAAUUUGAGGUCGUUCCAAG .........(((((.(((((((((((((......))))))).((.....)))))..)))..)))))...... ( -17.00, z-score = -0.80, R) >droGri2.scaffold_15203 5780186 51 - 11997470 -------CAGCGGCGCAAUGUGCCGUAAAAAUAAUUAUGGCUGCGAACUGCACAAUUU-------------- -------..((((((((....(((((((......)))))))))))..)))).......-------------- ( -16.40, z-score = -2.07, R) >droMoj3.scaffold_6359 3860276 55 + 4525533 ------------ACGCAAUGUGCCGUAAAAAUAAUUAUGGCUGC-AACUGCACAAUUUGAGUAGCAAA---- ------------..(((.((((((((((......))))))).))-)..))).................---- ( -12.60, z-score = -0.72, R) >consensus _______CACCGACGCAAUGUGCCGUAAAAAUAAUUAUGGCUGC_AACUGCACAAUUUUCCU_GCA______ ..............(((..(((((((((......))))))).))....)))..................... (-10.50 = -10.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:14:36 2011