| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,291,975 – 4,292,032 |
| Length | 57 |
| Max. P | 0.973444 |
| Location | 4,291,975 – 4,292,032 |
|---|---|
| Length | 57 |
| Sequences | 6 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 75.76 |
| Shannon entropy | 0.47202 |
| G+C content | 0.47263 |
| Mean single sequence MFE | -17.21 |
| Consensus MFE | -9.88 |
| Energy contribution | -11.38 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.89 |
| SVM RNA-class probability | 0.973444 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4291975 57 + 22422827 UACUGCGAAUAGAGAGUUCCUGGCACUUCAAUUGAGCUGCUUGGGG-CUCUUCUUCUU ......(((..(((((((((.((((.(((....))).)))).))))-))))).))).. ( -20.50, z-score = -2.59, R) >droSim1.chrX 3287452 56 + 17042790 UACUGCGAAUAGAGAGUUCCUGGCACUUCAAUUGAGCUGCUUGGGG-CUCUUCUACU- .........(((((((((((.((((.(((....))).)))).))))-))).))))..- ( -20.70, z-score = -2.89, R) >droSec1.super_4654 242 56 - 4547 UACUGCGAAUAGAGAGUUCCUGGCACUUCAAUUGAGCUGCUUGGGG-CUCUUCUACU- .........(((((((((((.((((.(((....))).)))).))))-))).))))..- ( -20.70, z-score = -2.89, R) >droYak2.chrX 17623805 57 - 21770863 UACUGCGAAUAGAGAGUUCCUGGCACUUCAAUUGAGUUGCUUGGGGGCUCUUGCUCU- ......((...((((((((((((((.(((....))).))).)))))))))))..)).- ( -20.10, z-score = -2.08, R) >droEre2.scaffold_4690 1667282 56 + 18748788 UACUGCCAAUAUAGAGUUCCUGGCACUUCAAUUGGCUUGCUUGGGG-CUCUUCUUCU- ............((((((((.((((..((....))..)))).))))-))))......- ( -16.20, z-score = -1.77, R) >droPer1.super_11 2515373 52 - 2846995 UAUGACAGAAGGCGACUUUUCCCCAUUCCAAUU----UUCAUCAGUCUUCCCAUCC-- .......((((((....................----.......))))))......-- ( -5.03, z-score = -0.31, R) >consensus UACUGCGAAUAGAGAGUUCCUGGCACUUCAAUUGAGCUGCUUGGGG_CUCUUCUUCU_ ...........(((((((((.((((.(((....))).)))).)))).)))))...... ( -9.88 = -11.38 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:14:34 2011