| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,289,189 – 4,289,301 |
| Length | 112 |
| Max. P | 0.748874 |
| Location | 4,289,189 – 4,289,301 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 81.19 |
| Shannon entropy | 0.32443 |
| G+C content | 0.40150 |
| Mean single sequence MFE | -23.16 |
| Consensus MFE | -13.20 |
| Energy contribution | -13.36 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.748874 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4289189 112 - 22422827 CGAACUUUAAGCCUUCGUUACGUUAAAAUAUUGGCAUAAUGCCGA---AUAAUUUCGGUAUCUGACAUUCACGUCUUUUCCCAACCACUCACUUGGUAUUCAUUUACCUCUGGCA ..........(((.................((((....(((((((---(....))))))))..(((......))).....))))..........((((......))))...))). ( -22.50, z-score = -2.21, R) >droEre2.scaffold_4690 1664455 103 - 18748788 -CGGUUUUUGGUAUC-------UGCAACUAUUGGCAUAAUGCCGA---AUACCUUCGGUAUCUGGCAUUCACGU-UUUUCACAGCCACUCACUUGGUAUUCAUUUGCCUCAGGCA -..((((..((((..-------..........(((.....)))((---(((((...(((...((((........-........))))...))).)))))))...))))..)))). ( -25.89, z-score = -1.68, R) >droYak2.chrX 17620792 94 + 21770863 -------UAAG-----------GUAAAAUAUAGGCAUAAUGCCGA---AUACCUUCAGCAUCUGACAUUCACGUCUUUUUACAACCACUCACUUGGUAUUCAUUUACCUCUGGCA -------..((-----------(((((.....(((.....)))((---(((((.((((...)))).......((......))............))))))).)))))))...... ( -21.10, z-score = -3.17, R) >droSec1.super_4 3742667 107 + 6179234 CGAAUUUUAAGUCU--------UUAAAAUAUUGGCAUAGUGCCGAUAGAUACAUUCGGUAUCUGACAUUCACGUCUUUUCCCAACCACUGACUUGGUAUUCAUUUACCUCUGGCA .((((.(((((((.--------......(((((((.....)))))))(((((.....))))).(((......)))..............))))))).)))).............. ( -24.70, z-score = -2.42, R) >droSim1.chr3L 4518038 107 - 22553184 CGAACUUUAAGUCU--------UUAAAAUAUUGGCAUAGUGCCGAUAGAUACAUUCGGUAUCUGACAUUCACGUCUUUGCCCAACCACUCACUUGGUAUUCAUUUACCUCUGGCA ..........(((.--------......(((((((.....)))))))(((((.....))))).)))...........((((.............((((......))))...)))) ( -21.59, z-score = -1.27, R) >consensus CGAACUUUAAGUCU________UUAAAAUAUUGGCAUAAUGCCGA___AUACAUUCGGUAUCUGACAUUCACGUCUUUUCCCAACCACUCACUUGGUAUUCAUUUACCUCUGGCA ..........(((...................((....(((((((.........)))))))..(((......))).........))........((((......))))...))). (-13.20 = -13.36 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:14:31 2011