| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,278,856 – 4,278,913 |
| Length | 57 |
| Max. P | 0.924653 |
| Location | 4,278,856 – 4,278,913 |
|---|---|
| Length | 57 |
| Sequences | 4 |
| Columns | 57 |
| Reading direction | forward |
| Mean pairwise identity | 92.90 |
| Shannon entropy | 0.10956 |
| G+C content | 0.30061 |
| Mean single sequence MFE | -9.21 |
| Consensus MFE | -7.99 |
| Energy contribution | -7.80 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.31 |
| SVM RNA-class probability | 0.924653 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4278856 57 + 22422827 GAUCCAUUUUUUUUUUGUCAGUUUAUUUAUUGUUGCUCCAUUUUUAGUAGCUGACAA ..............(((((((((.......((......))........))))))))) ( -8.86, z-score = -2.58, R) >droSim1.chrX 3298680 55 + 17042790 GAUCUAUUUUUUUU--GUCAGUUCAUUUAUUGCUGCUCCAUUUUUAGUAGCUGACAA ............((--((((...........((((((........)))))))))))) ( -9.40, z-score = -1.94, R) >droSec1.super_4 3732527 56 - 6179234 GAUCUAUUUUUUUUU-GUCAGUUCAUUUAUUGCUGCUCCAUUUUUAGUAGCUGACAA .............((-((((...........((((((........)))))))))))) ( -9.40, z-score = -2.01, R) >droYak2.chrX 17610166 55 - 21770863 AAUCCAUUUUUUCU--GUCAGUUUAUUUAUUGCUGCUCCAUUUUUAGUAGCUGACAA .............(--((((...........((((((........))))))))))). ( -9.20, z-score = -2.36, R) >consensus GAUCCAUUUUUUUU__GUCAGUUCAUUUAUUGCUGCUCCAUUUUUAGUAGCUGACAA ................((((...........((((((........)))))))))).. ( -7.99 = -7.80 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:14:27 2011