| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,274,930 – 4,275,025 |
| Length | 95 |
| Max. P | 0.578014 |
| Location | 4,274,930 – 4,275,025 |
|---|---|
| Length | 95 |
| Sequences | 7 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 75.38 |
| Shannon entropy | 0.44886 |
| G+C content | 0.60594 |
| Mean single sequence MFE | -24.02 |
| Consensus MFE | -15.89 |
| Energy contribution | -15.77 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.578014 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4274930 95 + 22422827 ACCCCCUUGGGCCACCACAAGA--GCCCCAGUCCCCC----CGCUUUUUUUGCGUUUCUUUCGCACUGAUCUCAGCUGUCGUCGCUUGUUAGUGCGCACGC .....((.(((((.......).--)))).))......----(((.......))).......(((((((((...(((.......))).)))))))))..... ( -23.10, z-score = -1.19, R) >droEre2.scaffold_4690 1644899 89 + 18748788 -ACCCCCCUGGCCGCUCCAAGA--GCCCCAACCCCCC---------UUCUUGCGUUUCUUUCGCACUGAUCUCAGCUGUCGUCGCUUGUUAGUGCGCACGC -.......(((..((((...))--)).))).......---------.....((((......(((((((((...(((.......))).))))))))).)))) ( -20.90, z-score = -1.47, R) >droYak2.chrX 17606934 100 - 21770863 -ACCCCCUCGACCGCUCCAACAUCGUCCCGAUCCCCCGAUCCUCCCUUGUUGCGUUUCUUUCGCACUGAUCUCAGCUGUCGUCGCUUGUUAGUGCGCACGC -............((..(((((.......((((....))))......)))))..........((((((((...(((.......))).)))))))))).... ( -20.62, z-score = -1.56, R) >droSec1.super_4 3728767 90 - 6179234 -ACCCCCUGGGCCACCACAAAG--UUCCCAGUCCCCC----C----UUUUUGCGUUUCUUUCGCACUGAUCUCAGCUGUCGUCGCUUGUUAGUGCGCACGC -.....(((((..((......)--).)))))......----.----.....((((......(((((((((...(((.......))).))))))))).)))) ( -21.90, z-score = -1.87, R) >droSim1.chrX 3294577 90 + 17042790 -ACCCCCUGGGCCACCACAAAG--CUCCCAGUCCCCC----C----UUUUUGCGUUUCUUUCGCACUGAUCUCAGCUGUCGUCGCUUGUUAGUGCGCACGC -.....(((((...........--..)))))......----.----.....((((......(((((((((...(((.......))).))))))))).)))) ( -20.82, z-score = -1.18, R) >droPer1.super_11 2497339 86 - 2846995 --CUCUCUCAACC--UGCAGCACGGGCUGAGGCUGAG-----------GCUGCGUUCCACUCGCACUGAUCCCAGCUGUCGUCGCUUGUUAGUGCGCACGC --...(((((.((--(.((((....))))))).))))-----------)..((((......(((((((((...(((.......))).))))))))).)))) ( -29.90, z-score = 0.17, R) >dp4.chrXL_group1a 5364311 86 - 9151740 --CUCUCUCAACC--UGCAGCACGGGCUGAGGCUGGG-----------GCUGCGUUCCACUCGCACUGAUCCCAGCUGUCGUCGCUUGUUAGUGCGCACGC --....((((.((--((.....)))).))))((((((-----------((((((.......))))..).)))))))...((((((........))).))). ( -30.90, z-score = 0.08, R) >consensus _ACCCCCUCGGCCACUACAACA__GUCCCAGUCCCCC____C____UUGUUGCGUUUCUUUCGCACUGAUCUCAGCUGUCGUCGCUUGUUAGUGCGCACGC ......((((.................))))....................((((......(((((((((...(((.......))).))))))))).)))) (-15.89 = -15.77 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:14:27 2011