| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,085,928 – 10,086,032 |
| Length | 104 |
| Max. P | 0.677678 |
| Location | 10,085,928 – 10,086,032 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 52.12 |
| Shannon entropy | 0.91662 |
| G+C content | 0.36959 |
| Mean single sequence MFE | -19.39 |
| Consensus MFE | -5.76 |
| Energy contribution | -5.37 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.87 |
| Mean z-score | -1.07 |
| Structure conservation index | 0.30 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.677678 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10085928 104 + 23011544 UUAAAACGCUUUGAUGCGGAAGUGAUGGCCAGAAUCAAUGUUGGCCUAG--UUACGAAUUCUAUGCGAGUUUUACAAAAAUGAAAGUAGUAUCUAAUUUAUUAAUG ......(((......)))...(((((((((((........))))))..)--))))(((((..((((.(.(((((......))))).).))))..)))))....... ( -21.30, z-score = -1.14, R) >droVir3.scaffold_12723 3851063 100 + 5802038 ---UAACAAAAUUGUCCGCA---GACAAUCAAGCUCACAAUUUAAUUGGACUUAUGGAUGGAUUACCUGGCUGGCACACAUGAGCACAUGAGCACAGCCUUUUCUC ---........(..((((..---(.....)(((.((.((((...))))))))).))))..).......(((((((...((((....)))).)).)))))....... ( -19.10, z-score = 0.11, R) >droAna3.scaffold_12916 13917110 79 + 16180835 ----------------------UAGUUUUUCGAUUUUUAACUCGGAGGA--CAUUGAUGGCCAAUAGUGUUUUAUCAAAAAUAAAGUCUUAACAGAGUUAGUG--- ----------------------..............(((((((..((((--(((((.....))))..((((((....))))))..)))))....)))))))..--- ( -13.90, z-score = -0.86, R) >droEre2.scaffold_4929 10701655 85 + 26641161 ---AAACGCUUUGAUGCGCACGUGAUGACCAACCUCAACGUUGGCCUAG--UAACGAAUUCUAUACACAUUUUACAACAUUCAAAGCAGU---------------- ---....(((((((.........((((.(((((......)))))....(--((..........))).)))).........)))))))...---------------- ( -16.27, z-score = -1.08, R) >droSec1.super_3 5524043 101 + 7220098 ---AAACGCAUUGAUGCGGACGUGAUGGCCAGAAACAAUGUUGGCCUAG--UUACGAAUUUUAUGCGAGUUUUACAAAAACGAAAGUAGUAUCUAAUUAAUUAAUG ---...((((....))))..((((((((((((........))))))..)--)))))((((..((((..(.....)....((....)).))))..))))........ ( -22.70, z-score = -1.65, R) >droSim1.chr2L 9874511 101 + 22036055 ---AAACGCUUUGAUGCGGACGUGAUGGCCAGAAACAAUGUUGGCCUAG--UUACGAACUCUAUGCGAGUUUUACAAAAAUGAAAGUAGUAUCUAAUUAAUUAAUG ---.........(((((..(((((((((((((........))))))..)--))))((((((.....)))))).............)).)))))............. ( -23.10, z-score = -1.82, R) >consensus ___AAACGCUUUGAUGCGGACGUGAUGGCCAGAAUCAAUGUUGGCCUAG__UUACGAAUUCUAUGCGAGUUUUACAAAAAUGAAAGUAGUAUCUAAUUAAUUAAUG ......(((......)))........((((((........)))))).........((((((.....)))))).................................. ( -5.76 = -5.37 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:29:31 2011