| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,258,120 – 4,258,199 |
| Length | 79 |
| Max. P | 0.545666 |
| Location | 4,258,120 – 4,258,199 |
|---|---|
| Length | 79 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 69.59 |
| Shannon entropy | 0.50421 |
| G+C content | 0.32560 |
| Mean single sequence MFE | -14.92 |
| Consensus MFE | -8.16 |
| Energy contribution | -7.36 |
| Covariance contribution | -0.80 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.545666 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4258120 79 + 22422827 GGUUAAUACUUCAAGGACUUGU-----UCCUUUUU--------UUUUCAAGUUAUUGUUU--CAAUAAUUGAAGGUAUUACAUUUACUACGAAU ...(((((((..(((((.....-----)))))...--------..(((((.((((((...--)))))))))))))))))).............. ( -12.30, z-score = -1.17, R) >droSim1.chrX 3271963 78 + 17042790 GGUACAUACUUCAAGGACUUGU-----UCCUUUUU--------UCC-CAAGUUGUUGUUU--CAAUAAUUGAAUACAAUACAUCUACUACGAAU ((((........(((((.....-----)))))...--------...-...((.(((((((--((.....)))).)))))))...))))...... ( -9.60, z-score = 0.01, R) >droSec1.super_4 3711537 78 - 6179234 GGUACAUACUUCAAGGACUUGU-----UCCUUUUU--------UCC-CAAGUUGUUGUUU--CAAUAAUUGAAGGUACUACAUCUACUACGAAU (((((...(((((((((.....-----)))))...--------...-..((((((((...--)))))))))))))))))............... ( -13.60, z-score = -0.67, R) >droYak2.chrX 17590680 94 - 21770863 GGUAAUUCCUUCAAGGACUUGAAGGAAUCCUUCUUCCAAGUUGUUUCGAUGACGUUGCUUAACAAUGUUUCAAGGUAUUACAUUUACUACAAAU .(((((.((((.((.(((((((((((....))))).)))))).))..((.(((((((.....))))))))))))).)))))............. ( -22.80, z-score = -2.42, R) >droEre2.scaffold_4690 1628806 90 + 18748788 GGUAAUUCCUUCAAGGACUUGCUC--CUUUUUUUUCGAAAUUGUUUUGAUGACGUUGCUCAACGAUGUUUGAAGUUACCAAUUUUAAUACCA-- (((((...(((((((((.....))--))......(((((.....))))).(((((((.....))))))))))))))))).............-- ( -16.30, z-score = -1.13, R) >consensus GGUAAAUACUUCAAGGACUUGU_____UCCUUUUU________UUU_CAAGUUGUUGUUU__CAAUAAUUGAAGGUACUACAUUUACUACGAAU ........(((((((((..........))))).................((((((((.....)))))))))))).................... ( -8.16 = -7.36 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:14:21 2011