| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,242,874 – 4,242,976 |
| Length | 102 |
| Max. P | 0.544356 |
| Location | 4,242,874 – 4,242,976 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 68.12 |
| Shannon entropy | 0.56034 |
| G+C content | 0.45558 |
| Mean single sequence MFE | -25.60 |
| Consensus MFE | -13.64 |
| Energy contribution | -14.20 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.39 |
| Mean z-score | -0.88 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.544356 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4242874 102 + 22422827 ---------------UGGCCUCUUUUUUUGCCACUGCAGGAUGUCCGUGUCUUCAUGUCUUCAUUUUGUUUGUGGCCAGCCGCACAAUUAUUAUUGCAGGAGCGCUCGAAACGCACA ---------------.((((((((.....(((((.((((((((..((((....))))....))))))))..))))).....(((..........)))))))).)))........... ( -27.00, z-score = -0.32, R) >droAna3.scaffold_13335 3104691 77 - 3335858 ---------------AUAUACCCACUUCUCUCAGUGUAAACUGCCC--------AUGUCUUCUAUUUGCUUGUGGCCGGCCAUAGGAUUAUUAUUUCAAG----------------- ---------------................((((....))))...--------..............(((((((....)))))))..............----------------- ( -11.30, z-score = 0.24, R) >droEre2.scaffold_4690 1614263 108 + 18748788 UAACCCUGAUUUAAAUUGGGUUUUUUUCCGCAACCGCAGGAUGCCC--------AUGUCUUCAUUUGGUUUGUGGCCAGCCGCACAAUUAUUAUUGCAGGAGUGCCCAAA-CGCACA ....((((...(((..(((((.....(((((....)).))).))))--------)..........((((((((((....))))).))))))))...)))).((((.....-.)))). ( -29.70, z-score = -0.81, R) >droYak2.chrX 17575633 106 - 21770863 UUACCCUUAUUUAUAUGGC--UUUUUUUUGCCACUGCAGGCUGACC--------AUGUCUUUAUUUUGUUUGUGGCCAGCCGCGCAAUUAUUAUUGCAGGAGUGCUCGAA-CGCACA ....(((........((((--........))))..((.(((((.((--------(((.(........)..))))).)))))))(((((....)))))))).((((.....-.)))). ( -32.60, z-score = -2.75, R) >droSec1.super_4 3695647 101 - 6179234 ---------------UAACCGCUUUUUCUGCCACUGCAGGAUGUCCGUGUCUUAAUGUCUUCAUUUUGUUUGUGGCCUGCCGCACAAUUAUUAUUGCAGGAGUGCUCGAA-CGCACA ---------------...((.........(((((.((((((((..(((......)))....))))))))..))))).....(((..........))).)).((((.....-.)))). ( -25.50, z-score = -0.54, R) >droSim1.chrX 3259972 101 + 17042790 ---------------UAACCGCUUUUUCUGCCACUGCAGGAUGUCCGUGUCUUCAUGUCUUCAUUUUGUUUGUGGCCUGCCGCACAAUUAUUAUUGCAGGAGUGCUCGAA-CGCACA ---------------...((.........(((((.((((((((..((((....))))....))))))))..))))).....(((..........))).)).((((.....-.)))). ( -27.50, z-score = -1.09, R) >consensus _______________UAACCGCUUUUUCUGCCACUGCAGGAUGUCC________AUGUCUUCAUUUUGUUUGUGGCCAGCCGCACAAUUAUUAUUGCAGGAGUGCUCGAA_CGCACA .........................((((((....((((((((..................)))))))).(((((....)))))...........))))))((((.......)))). (-13.64 = -14.20 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:14:20 2011