| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,241,907 – 4,241,986 |
| Length | 79 |
| Max. P | 0.997412 |
| Location | 4,241,907 – 4,241,986 |
|---|---|
| Length | 79 |
| Sequences | 7 |
| Columns | 85 |
| Reading direction | reverse |
| Mean pairwise identity | 72.42 |
| Shannon entropy | 0.53832 |
| G+C content | 0.44544 |
| Mean single sequence MFE | -20.33 |
| Consensus MFE | -9.97 |
| Energy contribution | -10.38 |
| Covariance contribution | 0.41 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.79 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.10 |
| SVM RNA-class probability | 0.997412 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4241907 79 - 22422827 ACGGAACCGGCUGAUAGCUGUUAGACAACU----GAACUAACAGCACAUCGUUGCAGCCGGAAGCCAAGAAACAUCUAAAACU-- ..((..(((((((...((((((((......----...)))))))).((....)))))))))...)).................-- ( -26.60, z-score = -4.69, R) >droSim1.chrX 3259040 80 - 17042790 ACGAAACCGGCUGAUAGCUGAUAGACAACU----GAACUAACAGCACAUCGUUGCAGCCGGAAGCCAAGAAACAUCUAAAAACU- ......(((((((...((((.(((......----...))).)))).((....))))))))).......................- ( -19.90, z-score = -3.31, R) >droSec1.super_4 3694695 80 + 6179234 ACGAAACCGGCUGAUAGCUGAUAGACAACU----GAACUAACAGCACAUCGUUGCAGCCGGAAGCCAAGAAACAUCUAAAAACU- ......(((((((...((((.(((......----...))).)))).((....))))))))).......................- ( -19.90, z-score = -3.31, R) >droYak2.chrX 17574654 79 + 21770863 ACAGAUCCGGCUGUUAGCUGAUAGACAAUU----GAACUAACAUCGAAUCGUUGCAGCCGGAAGCCAAGAAACAUCUAAAACU-- .....(((((((((.(((.(((......((----((.......))))))))))))))))))).....................-- ( -18.60, z-score = -2.09, R) >droEre2.scaffold_4690 1613292 79 - 18748788 ACGGAUCCGGUUGUUAGCUGAUAGACAACU----GAACUAACAUCGAAUCGGUGCAGCCGGAAGCCAAGAAACAUCUAAAACU-- ..((.(((((((((..((((((.((.....----.........))..)))))))))))))))..)).................-- ( -21.54, z-score = -2.48, R) >droAna3.scaffold_13335 3103704 76 + 3335858 ACGGAUCCGGCUGAUAGCUGACAGACAACU----GAACU-ACGGAAAAUCGCCGCAGCCGGAAGCCAAGAAAUAUCUGGCU---- .....((((((((...((...(((....))----)..(.-...)......))..))))))))(((((.((....)))))))---- ( -26.40, z-score = -3.50, R) >apiMel3.Group8 10518264 83 - 11452794 UCGUUCCCUGCUUACUUUCAAAAAGCUUUUUCAACAACAAGCGUUGCAUUAUUAAGUUUAGAGG--AAAAAUUAUCUCACCUACU ...(((((((((((....(((...((((.((....)).)))).)))......)))))..)).))--))................. ( -9.40, z-score = -0.13, R) >consensus ACGGAACCGGCUGAUAGCUGAUAGACAACU____GAACUAACAGCACAUCGUUGCAGCCGGAAGCCAAGAAACAUCUAAAACU__ ......(((((((.((((.(((.........................))))))))))))))........................ ( -9.97 = -10.38 + 0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:14:20 2011