| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,224,573 – 4,224,684 |
| Length | 111 |
| Max. P | 0.639235 |
| Location | 4,224,573 – 4,224,684 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 81.02 |
| Shannon entropy | 0.36688 |
| G+C content | 0.39632 |
| Mean single sequence MFE | -26.34 |
| Consensus MFE | -15.45 |
| Energy contribution | -14.49 |
| Covariance contribution | -0.96 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.639235 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4224573 111 + 22422827 AUAAAUGCCCAAGUGCAUAGAGUAAUUACUACUUUUCGCCAUAUUUAUUCGAGAGGUACAAGUACUACUUGAAGCGAAAGUAUCUCAAGGUAUUCCGGCAGCCAGAAGUAU .....((((..(((((...(((....((((....(((((........((((((.((((....)))).))))))))))))))).)))...)))))..))))........... ( -27.50, z-score = -2.37, R) >droAna3.scaffold_13335 3079096 103 - 3335858 AGAAAUAUCCGUUCGAGAAGUGACCUGUCUCAAUUACUAGAUAAUUGC-CAUCAUUCACAAGUGGCA---GGGAAAAAAGUAUCUCAAGGUAUUC----AUCCAUAAGUAU ..............((((((....)).))))...((((......((((-(((.........))))))---)(((....((((((....)))))).----.)))...)))). ( -17.90, z-score = -0.32, R) >droEre2.scaffold_4690 1594826 111 + 18748788 AUAAAUGCCCAAGUGCAUAUCGUAAUUACUACUUCUCACCGUAUUUACUCGAUAGGCACAAGUACUGCUUGAAGCGAAAGUAUCUGAAGGUAUUCUGGCAGCCAGAAGUAU .....((((...((((.((((((((.(((...........))).))))..)))).)))).((((((....((.((....)).))....))))))..))))........... ( -26.70, z-score = -1.20, R) >droYak2.chrX 17554297 111 - 21770863 AUAAAUGCCCAAGUGCAUAUCGUAAUUACUACUUCUCACCGUAUUUAUUCGAGAGGUACAAGUACUACUUGAAGCGAAAGUAUCUCAAGGUAUUCUGGCAGCCAGAAGUAU .....((((..(((((.....(((.....((((((((.............))))))))....)))..(((((.((....))...))))))))))..))))........... ( -27.32, z-score = -2.14, R) >droSec1.super_4 3676896 111 - 6179234 AUAAAUGCCCAAGUGCAUAGCGUAAUUACUACUUCUCGCCGUAUUUAUACGAGAGGUACAAGUACUACUUGAAGCGAAAGUAUCUCAAGGUAUUCCGGCAGCCAGAAGUAU .....((((..(((((.....(((.....(((((((((...........)))))))))....)))..(((((.((....))...))))))))))..))))........... ( -29.30, z-score = -2.17, R) >droSim1.chrX 3252930 111 + 17042790 AUAAAUGCCCAAGUGCAUAGCGUAAUUACUACUUCUCGCCGUAUUUAUACGAGAGGUACAAGUACUACUUGAAGCGAAAGUAUCUCAAGGUAUUCCGGCAGCCAGAAGUAU .....((((..(((((.....(((.....(((((((((...........)))))))))....)))..(((((.((....))...))))))))))..))))........... ( -29.30, z-score = -2.17, R) >consensus AUAAAUGCCCAAGUGCAUAGCGUAAUUACUACUUCUCGCCGUAUUUAUUCGAGAGGUACAAGUACUACUUGAAGCGAAAGUAUCUCAAGGUAUUCCGGCAGCCAGAAGUAU ...((((((..(((((.....((....))((((((((.............))))))))...)))))....((.((....)).))....))))))................. (-15.45 = -14.49 + -0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:14:16 2011