| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,216,549 – 4,216,640 |
| Length | 91 |
| Max. P | 0.749012 |
| Location | 4,216,549 – 4,216,640 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 81.03 |
| Shannon entropy | 0.33308 |
| G+C content | 0.42384 |
| Mean single sequence MFE | -23.87 |
| Consensus MFE | -15.88 |
| Energy contribution | -17.08 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.749012 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4216549 91 + 22422827 ACUGAGGUUAACAGAAGCCAAUCGAUA-CCAAGCGCAAGCACUGAAAUGUAUCGUCGAGAAACAUCGGUGGUCAAUGCAUUCGAUGCUUUUU-- ............((((((..(((((..-.((.((....)).......((.(((..(((......)))..))))).))...))))))))))).-- ( -21.30, z-score = -0.40, R) >droSim1.chrX 3244625 87 + 17042790 ----AGGUUAACAGAAGCCAAUCGAUA-CCUAGCGCAAGCAUUGAAAUGUAUCGGCGAGAAACAUCGGUGGUCGAUGCAUUCGAUGCUUUUU-- ----.((((......))))........-........((((((((((.(((((((((..((....))....)))))))))))))))))))...-- ( -26.90, z-score = -2.27, R) >droSec1.super_4 3668998 91 - 6179234 ACCGAGGUUAACAGAAGCCAAUCGAUA-CCUAGCGCAAGCAUUGAAAUGUAUCGGCGAGAAACAUCGGUGGUCGAUGCAUUCGAUGCUUUUU-- ..(((((((......))))..)))...-........((((((((((.(((((((((..((....))....)))))))))))))))))))...-- ( -27.90, z-score = -2.09, R) >droYak2.chrX 17545506 90 - 21770863 --ACUGGCUUACAGUACCUUAUCGAUAACCAAGCGAAAGCAUAAAAAUAUAUCGGCGAGAAAUAUCGAUGCUCGAUGCAUUCGAUGCUUUUU-- --((((.....))))..(((..(((((.....((....)).........)))))..)))...(((((((((.....))).))))))......-- ( -22.24, z-score = -1.97, R) >droEre2.scaffold_4690 1586923 84 + 18748788 ----------ACUGAUUUUUAUCGAUACCCAAACGAAAGCAUUGAAAUAUAUCGGCGAGAAACAUCGAUGCGCGAUGCAUUCGAUGCUUUUUUU ----------..((((....))))..........((((((((((((...((((((((.((....))..))).)))))..))))))))))))... ( -21.00, z-score = -2.00, R) >consensus ____AGGUUAACAGAAGCCAAUCGAUA_CCAAGCGCAAGCAUUGAAAUGUAUCGGCGAGAAACAUCGGUGGUCGAUGCAUUCGAUGCUUUUU__ ....................................((((((((((.(((((((.(((......))).....)))))))))))))))))..... (-15.88 = -17.08 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:14:10 2011