| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,207,567 – 4,207,618 |
| Length | 51 |
| Max. P | 0.939791 |
| Location | 4,207,567 – 4,207,618 |
|---|---|
| Length | 51 |
| Sequences | 4 |
| Columns | 52 |
| Reading direction | forward |
| Mean pairwise identity | 95.15 |
| Shannon entropy | 0.07801 |
| G+C content | 0.50245 |
| Mean single sequence MFE | -12.25 |
| Consensus MFE | -12.07 |
| Energy contribution | -11.70 |
| Covariance contribution | -0.37 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.46 |
| SVM RNA-class probability | 0.939791 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4207567 51 + 22422827 ACAAAGCGCAGCCAA-UUGGCAAAUAUGCUUUGACACACACCAGAGCGGAUC ..........(((..-..))).....(((((((........))))))).... ( -12.20, z-score = -1.84, R) >droSim1.chrX 3206075 51 + 17042790 ACAAAGCGCAGCCAA-UUGGCAAAUAUGCUUUGACACACACCGGAGCGGAUC .(((((((..(((..-..))).....))))))).......(((...)))... ( -12.50, z-score = -1.49, R) >droSec1.super_4 3657034 51 - 6179234 ACAAAGCGCAGCCAA-UUGGCAAAUAUGCUUUGACACACACCGGAGCGGAUC .(((((((..(((..-..))).....))))))).......(((...)))... ( -12.50, z-score = -1.49, R) >droAna3.scaffold_13117 423106 52 - 5790199 ACAAAGGGCAGCCAAAUCGGCAAAUAUGCUUUGACACACACCGGAGCAGAUC ..........(((.....))).....(((((((........))))))).... ( -11.80, z-score = -1.75, R) >consensus ACAAAGCGCAGCCAA_UUGGCAAAUAUGCUUUGACACACACCGGAGCGGAUC ..........(((.....))).....(((((((........))))))).... (-12.07 = -11.70 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:14:10 2011