| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,203,771 – 4,203,865 |
| Length | 94 |
| Max. P | 0.800102 |
| Location | 4,203,771 – 4,203,865 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 59.73 |
| Shannon entropy | 0.66137 |
| G+C content | 0.41875 |
| Mean single sequence MFE | -17.36 |
| Consensus MFE | -4.92 |
| Energy contribution | -5.92 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.28 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.800102 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4203771 94 + 22422827 ----------------------UGUCCUUCUCCUCCUUGACUCUUGUUAAGCUUCCACUUUCUUAUUUUAUUUUUAUUUCGAUAGUAGAGGGCCGUCGCAACUUUGUACUGUCAAA ----------------------.............((((((....)))))).............................(((((((.((((.........)))).)))))))... ( -15.30, z-score = -1.12, R) >droSec1.super_4 3645223 98 - 6179234 ------------------UUAUCCCCCUUGACUCUCCUGCACCUUGUUACGCUCCCACUUUCUUAUUUUCUUUUUAUUUCGAUAGUGGAGGGCCAUCGCAACUUUGUACUGUCAAA ------------------.........(((((.....((((..((((...(((((((((.((..................)).))))).))))....))))...))))..))))). ( -19.67, z-score = -2.77, R) >droYak2.chrX 17534376 98 - 21770863 ------------------UUUCCCUCCUUGACUUUGCUACACCUUGUUACGCUCCCUCUUUCCUAUUUUCCCUCUUUUUGGAUAGCAAAGGGCCAUCGCAACUUUGUACUGUCAAA ------------------.........(((((...(.((((....(((.((....((((((.((((((...........)))))).))))))....)).)))..))))).))))). ( -16.70, z-score = -1.84, R) >droEre2.scaffold_4690 1575453 94 + 18748788 ----------------------CCUCCUUGACUUUCCUACACCUUGUUACGCUGCCCCUUUUCUAUUCCGCUCUUAUUUUGAUAGUGGAGGGCCAUCGCAACUUUGUACUGUCAAA ----------------------.....(((((.....((((....(((.((.((.(((((..(((((.............)))))..))))).)).)).)))..))))..))))). ( -20.82, z-score = -2.82, R) >droWil1.scaffold_181150 2178491 114 + 4952429 UCUCUUCUUCAUCCAUAAUGUCAGUAUCAAAAGCUGCUUCUCCCUUUCUUAUUUCCCUCGUUUCAUCGAGUUUUUUUUUGGCAACUUU--GUUUGUGCCCCUUUUGUGCCUUCAAA ..................((...(((.((((((.......................((((......)))).........((((.(...--....))))).)))))))))...)).. ( -14.30, z-score = -1.90, R) >consensus __________________U___CCUCCUUGACUUUCCUACACCUUGUUACGCUCCCACUUUCUUAUUUUCUUUUUAUUUCGAUAGUAGAGGGCCAUCGCAACUUUGUACUGUCAAA ................................................................................(((((((.((((.........)))).)))))))... ( -4.92 = -5.92 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:14:09 2011