| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,186,632 – 4,186,682 |
| Length | 50 |
| Max. P | 0.688309 |
| Location | 4,186,632 – 4,186,682 |
|---|---|
| Length | 50 |
| Sequences | 5 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 98.80 |
| Shannon entropy | 0.01942 |
| G+C content | 0.52000 |
| Mean single sequence MFE | -9.30 |
| Consensus MFE | -9.30 |
| Energy contribution | -9.30 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.03 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.688309 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4186632 50 - 22422827 CCACACAAAUUAGACUAUAAAUCGGCGCCAAAGUCCACGGACAAGCGGCG ......................((.(((....(((....)))..))).)) ( -9.30, z-score = -1.18, R) >droSim1.chrX 3223127 50 - 17042790 CCACACAAAUUAGACUAUAAAUCGGCGCCAAAGUCCUCGGACAAGCGGCG ......................((.(((....(((....)))..))).)) ( -9.30, z-score = -0.93, R) >droSec1.super_4 3628160 50 + 6179234 CCACACAAAUUAGACUAUAAAUCGGCGCCAAAGUCCUCGGACAAGCGGCG ......................((.(((....(((....)))..))).)) ( -9.30, z-score = -0.93, R) >droYak2.chrX 17515330 50 + 21770863 CCACACAAAUUAGACUAUAAAUCGGCGCCAAAGUCCUCGGACAAGCGGCG ......................((.(((....(((....)))..))).)) ( -9.30, z-score = -0.93, R) >droEre2.scaffold_4690 1557923 50 - 18748788 CCACACAAAUUAGACUAUAAAUCGGCGCCAAAGUCCACGGACAAGCGGCG ......................((.(((....(((....)))..))).)) ( -9.30, z-score = -1.18, R) >consensus CCACACAAAUUAGACUAUAAAUCGGCGCCAAAGUCCUCGGACAAGCGGCG ......................((.(((....(((....)))..))).)) ( -9.30 = -9.30 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:14:02 2011