| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,163,774 – 4,163,837 |
| Length | 63 |
| Max. P | 0.759890 |
| Location | 4,163,774 – 4,163,837 |
|---|---|
| Length | 63 |
| Sequences | 3 |
| Columns | 63 |
| Reading direction | forward |
| Mean pairwise identity | 68.78 |
| Shannon entropy | 0.43329 |
| G+C content | 0.44974 |
| Mean single sequence MFE | -16.60 |
| Consensus MFE | -9.04 |
| Energy contribution | -9.17 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.759890 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4163774 63 + 22422827 GAUAAGAAGGAUAACGAGGACGUUUUCCAGAAACAGGAACCGUCUUCUUCCAUGUUGAUUAAG ........(((....(((((((..((((.......)))).))))))).)))............ ( -15.60, z-score = -1.71, R) >droAna3.scaffold_13117 5429088 63 + 5790199 GAUAAUUCGGACGACUUGGAUCCGUUGUACGAUCUGAAGCCGUCCGCUUCCAUUUUCAUGAAG .......((((((.((((((((........))))).))).))))))................. ( -16.30, z-score = -1.39, R) >droYak2.chrX 17497203 63 - 21770863 GACAAGGAGGAUAACGAAGACGUUUUCCAGAAACUGGAGCCGUCUGCAUCUAUGUUGUUGAAG (((((.(.((((.....(((((..((((((...)))))).)))))..)))).).))))).... ( -17.90, z-score = -2.09, R) >consensus GAUAAGAAGGAUAACGAGGACGUUUUCCAGAAACUGGAGCCGUCUGCUUCCAUGUUGAUGAAG ........(((....(((((((..(((((.....))))).))))))).)))............ ( -9.04 = -9.17 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:13:58 2011