Locus 13068

Sequence ID dm3.chrX
Location 4,163,209 – 4,163,303
Length 94
Max. P 0.946601
window17956 window17957

overview

Window 6

Location 4,163,209 – 4,163,300
Length 91
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 82.78
Shannon entropy 0.33255
G+C content 0.39825
Mean single sequence MFE -15.47
Consensus MFE -9.33
Energy contribution -9.78
Covariance contribution 0.45
Combinations/Pair 1.38
Mean z-score -2.11
Structure conservation index 0.60
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.80
SVM RNA-class probability 0.820927
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 4163209 91 + 22422827
GAACCAGCUCAAUCAGUUGAGCCACUUGAAUCAGUUCCAUCAGUUAAACCAAUUGAAUCAAUUGAGUCAGCUACACCAGCAUAUACAACAU
......((((((....))))))....(((.((((((...((((((.....))))))...)))))).)))(((.....)))........... ( -18.40, z-score =  -3.01, R)
>droSim1.chrX 3190426 91 + 17042790
GAACCAGCUCAAUCAGUUGAGCCACUUGAAUCAGUACCAUCAUUUAAGCCAAUUGAAUCAAUUGAGUAAGCUACACCAGCAUUUACAACAU
.....((((...((((((((..(((((((((.(......).))))))).....))..))))))))...))))................... ( -16.00, z-score =  -2.16, R)
>droSec1.super_4 3610372 91 - 6179234
GAACCAGCUCAAUCAGUUGAGCCACUUGAAUCAGUACCAUCAUUUAAGCCAAUUGAAUCAAUUGAGUAAGCUACACCAGCAUUUACAACAU
.....((((...((((((((..(((((((((.(......).))))))).....))..))))))))...))))................... ( -16.00, z-score =  -2.16, R)
>droYak2.chrX 17496644 91 - 21770863
GAACCAGCUCAAUCAGUUGAGUCACUUGAAUCAGUUCCAUCAAUUAAAUCAAUUGAAUCAAUUGAGUCAGCUACACCAACAUCUACACCAU
.....((((...((((((((.(((.((((.(.((((.....)))).).)))).))).))))))))...))))................... ( -18.20, z-score =  -3.11, R)
>droEre2.scaffold_4690 1538492 91 + 18748788
GAACCAGCUCAAUCAGUUGAGCCACUUGAAUCAGUUCCAUCAGUUAAAUCAUUUGAAUCAAUUGAGUCAGCUACACCAGCAUCUACACCAU
......((((((....))))))....(((.((((((...((((.........))))...)))))).)))(((.....)))........... ( -16.10, z-score =  -1.71, R)
>droMoj3.scaffold_6540 16821850 81 - 34148556
CAACCCGUUCAAUCAGUUGAGUCAAUUCAAUCAAUUCAAGCAGUUCAGCCAGUGCAGCCAGUUCAAUCAGUCAAAUCGGCA----------
..........(((..((((((....))))))..)))...(((.(......).))).(((.(((..........))).))).---------- (  -8.10, z-score =  -0.52, R)
>consensus
GAACCAGCUCAAUCAGUUGAGCCACUUGAAUCAGUUCCAUCAGUUAAACCAAUUGAAUCAAUUGAGUCAGCUACACCAGCAUCUACAACAU
......((((((....))))))........((((((...((((((.....))))))...))))))....(((.....)))........... ( -9.33 =  -9.78 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 4,163,212 – 4,163,303
Length 91
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 81.61
Shannon entropy 0.35573
G+C content 0.40263
Mean single sequence MFE -15.47
Consensus MFE -9.33
Energy contribution -9.78
Covariance contribution 0.45
Combinations/Pair 1.38
Mean z-score -2.38
Structure conservation index 0.60
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.52
SVM RNA-class probability 0.946601
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 4163212 91 + 22422827
CCAGCUCAAUCAGUUGAGCCACUUGAAUCAGUUCCAUCAGUUAAACCAAUUGAAUCAAUUGAGUCAGCUACACCAGCAUAUACAACAUAAG
...((((((....))))))....(((.((((((...((((((.....))))))...)))))).)))(((.....))).............. ( -18.40, z-score =  -3.34, R)
>droSim1.chrX 3190429 91 + 17042790
CCAGCUCAAUCAGUUGAGCCACUUGAAUCAGUACCAUCAUUUAAGCCAAUUGAAUCAAUUGAGUAAGCUACACCAGCAUUUACAACAUAAG
..((((...((((((((..(((((((((.(......).))))))).....))..))))))))...))))...................... ( -16.00, z-score =  -2.34, R)
>droSec1.super_4 3610375 91 - 6179234
CCAGCUCAAUCAGUUGAGCCACUUGAAUCAGUACCAUCAUUUAAGCCAAUUGAAUCAAUUGAGUAAGCUACACCAGCAUUUACAACAUAAG
..((((...((((((((..(((((((((.(......).))))))).....))..))))))))...))))...................... ( -16.00, z-score =  -2.34, R)
>droYak2.chrX 17496647 91 - 21770863
CCAGCUCAAUCAGUUGAGUCACUUGAAUCAGUUCCAUCAAUUAAAUCAAUUGAAUCAAUUGAGUCAGCUACACCAACAUCUACACCAUCAG
..((((...((((((((.(((.((((.(.((((.....)))).).)))).))).))))))))...))))...................... ( -18.20, z-score =  -3.52, R)
>droEre2.scaffold_4690 1538495 91 + 18748788
CCAGCUCAAUCAGUUGAGCCACUUGAAUCAGUUCCAUCAGUUAAAUCAUUUGAAUCAAUUGAGUCAGCUACACCAGCAUCUACACCAUCAG
...((((((....))))))....(((.((((((...((((.........))))...)))))).)))(((.....))).............. ( -16.10, z-score =  -2.07, R)
>droMoj3.scaffold_6540 16821853 78 - 34148556
CCCGUUCAAUCAGUUGAGUCAAUUCAAUCAAUUCAAGCAGUUCAGCCAGUGCAGCCAGUUCAAUCAGUCAAAUCGGCA-------------
.......(((..((((((....))))))..)))...(((.(......).))).(((.(((..........))).))).------------- (  -8.10, z-score =  -0.68, R)
>consensus
CCAGCUCAAUCAGUUGAGCCACUUGAAUCAGUUCCAUCAGUUAAACCAAUUGAAUCAAUUGAGUCAGCUACACCAGCAUCUACAACAUAAG
...((((((....))))))........((((((...((((((.....))))))...))))))....(((.....))).............. ( -9.33 =  -9.78 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:13:58 2011