| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,158,808 – 4,158,901 |
| Length | 93 |
| Max. P | 0.609441 |
| Location | 4,158,808 – 4,158,901 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 79.27 |
| Shannon entropy | 0.35394 |
| G+C content | 0.50790 |
| Mean single sequence MFE | -28.60 |
| Consensus MFE | -20.28 |
| Energy contribution | -22.68 |
| Covariance contribution | 2.40 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.609441 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4158808 93 + 22422827 GGUAGUAGUUGAGUGGUG-UCCAAGUGCUG---AAAUGUG--UAGCGCUUGCCAACGCUGUCAGUCAUAAUUAACACUCAGCUGCAGCUCCAGCUCCAG ((..((((((((((((((-(.(((((((((---.......--)))))))))...))))((.....)).......)))))))))))(((....))))).. ( -33.30, z-score = -2.53, R) >droAna3.scaffold_13117 353878 90 - 5790199 GAGAGGACAUACAUACUGGUACUACUGCUGCGUAUAUGCGCCUGGUCCUUGCCAACGCUGUCAGUCAUAAUUAACACUCCGAUCCCGCUA--------- (.(((((((...(((((((((....))))).))))..(((..((((....)))).))))))).((........)).))))..........--------- ( -15.70, z-score = 1.60, R) >droYak2.chrX 17492156 90 - 21770863 ---GGUAGUUCAGUGGUG-UCCAAGUGCUG---AAAUGUG--UAGCGCUUGCCAACGCUGUCAGUCAUAAUUAACACUCAGCUGCAGCUGCAGCUCCAG ---((.....(((((.((-..(((((((((---.......--))))))))).)).)))))...................((((((....)))))))).. ( -28.10, z-score = -0.69, R) >droSec1.super_4 3605312 87 - 6179234 GCUAGCAGUGGAGUGGUG-UCCAAGUGCUG---AAAUGUG--UAGCGCUUGCCAACGCUGUCAGUCAUAAUUAACACUCAGCUGCAGCUCCAG------ (((.(((((.((((((((-(.(((((((((---.......--)))))))))...))))((.....)).......))))).)))))))).....------ ( -32.00, z-score = -1.99, R) >droSim1.chrX_random 1569803 87 + 5698898 GGUAGCAGUUGAGUGGUG-UCCAAGUGCUG---AAAUGUG--UAGCGCUUGCCAACGCUGUCAGUCAUAAUUAACACUCAGCUGCAGCUCCAG------ (((.((((((((((((((-(.(((((((((---.......--)))))))))...))))((.....)).......))))))))))).)))....------ ( -33.90, z-score = -3.06, R) >consensus GGUAGCAGUUGAGUGGUG_UCCAAGUGCUG___AAAUGUG__UAGCGCUUGCCAACGCUGUCAGUCAUAAUUAACACUCAGCUGCAGCUCCAG______ ....((((((((((((((...(((((((((((........)))))))))))....)))((.....)).......))))))))))).............. (-20.28 = -22.68 + 2.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:13:56 2011