Locus 13063

Sequence ID dm3.chrX
Location 4,148,549 – 4,148,617
Length 68
Max. P 0.829693
window17950

overview

Window 0

Location 4,148,549 – 4,148,617
Length 68
Sequences 5
Columns 69
Reading direction reverse
Mean pairwise identity 69.30
Shannon entropy 0.55081
G+C content 0.51094
Mean single sequence MFE -21.44
Consensus MFE -10.10
Energy contribution -9.86
Covariance contribution -0.24
Combinations/Pair 1.53
Mean z-score -1.55
Structure conservation index 0.47
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.83
SVM RNA-class probability 0.829693
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 4148549 68 - 22422827
AGUUGUCAUGGG-GUCUCUCGGCAACAGGCAAAACUCCAACCAUGAGUUGGCCACGACAUUCUCGUCCU
.((((((..(((-....))))))))).(((..(((((.......))))).)))..(((......))).. ( -17.90, z-score =  -0.50, R)
>droEre2.scaffold_4690 1523843 68 - 18748788
AGUUGUCACGAG-GUCUUUCGGCACUAGGCAAAACUCCAACUAUGAGUUAGGCAGGACAUUUUCGUCCU
..(((((...((-(((....))).)).)))))(((((.......)))))....(((((......))))) ( -15.50, z-score =  -0.54, R)
>droYak2.chrX 17481867 68 + 21770863
AGUUGUCACAAG-GUCUUUCGGCAACAGGCAAAACUCAAACUGUGAGUUAGGCAGGACAUUUUCGUCCU
.((((((.....-.......))))))..((..((((((.....))))))..))(((((......))))) ( -20.30, z-score =  -2.61, R)
>droSec1.super_4 3595037 69 + 6179234
AGUUGUCAUGGGUUUCUCUCGGCAACAGGCAAAACUCGAACCAUGAGUUGGCCGGGACAUUUUCAUCCU
.((((((..(((...)))..)))))).(((..((((((.....)))))).)))((((........)))) ( -19.60, z-score =  -1.12, R)
>droPer1.super_11 2364531 66 - 2846995
AGCCCUCGCUGG-AUCUUCUUGUGGCAGCAGCCACUUGAAGAGUGGGUU--CCAGGGAGAGGCGGCACU
.((((((.((((-((((((..(((((....)))))..)))))......)--)))).))).)))...... ( -33.90, z-score =  -2.98, R)
>consensus
AGUUGUCACGGG_GUCUUUCGGCAACAGGCAAAACUCCAACCAUGAGUUAGCCAGGACAUUUUCGUCCU
.((((((..(((...)))..))))))......(((((.......)))))....(((((......))))) (-10.10 =  -9.86 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:13:52 2011