| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,136,802 – 4,136,893 |
| Length | 91 |
| Max. P | 0.974144 |
| Location | 4,136,802 – 4,136,893 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 73.97 |
| Shannon entropy | 0.47367 |
| G+C content | 0.47612 |
| Mean single sequence MFE | -20.07 |
| Consensus MFE | -13.02 |
| Energy contribution | -13.60 |
| Covariance contribution | 0.58 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.90 |
| SVM RNA-class probability | 0.974144 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4136802 91 - 22422827 GGGUUAUAAGUAGCCAGACCAUCUGCUUGUGACCGAACAGAAGCCGAA-CAAGAGUUUUGGACUCCAAGCACCGACCGAAAGCCAAAAGACA .((((((((((((.........)))))))))))).....((..(((((-.......)))))..))...........(....).......... ( -18.90, z-score = -0.72, R) >droSim1.chrX 3103218 91 - 17042790 GGGUUAUAAGUAGCCAGACCAUCUGCUUGUGACCGAACAGAAGCCGAA-CAAGAGUUUUGGACUCCAAGUACCAACCGAAAGCCAAAAGACA .((((((((((((.........))))))))))))..............-.....(((((((((.....)).))...(....)....))))). ( -19.60, z-score = -1.22, R) >droSec1.super_4 3584022 91 + 6179234 GGGUUAUAAGUAGCCAGACCAUCUGCUUGUGACCGAACAGAAGCCGAA-CAAGAGUUUUGGACUCCAAGUACCAACCGAAAGCCAAAAGACA .((((((((((((.........))))))))))))..............-.....(((((((((.....)).))...(....)....))))). ( -19.60, z-score = -1.22, R) >droYak2.chrX 17469972 86 + 21770863 GGGUUAUAAGUAGCCAGACCAUCUGCUUGUGACCGAACAGAGACUGAA-CAAGUG-UUUGGACUUCAAG----AACCGAAAGCCAAAAGACA .((((((((((((.........))))))))))))...(((...)))..-...((.-(((((..(((...----....)))..)))))..)). ( -22.00, z-score = -1.87, R) >droEre2.scaffold_4690 1511781 86 - 18748788 GGGUUAUAAGUAGCCAGACCAUCUGCUUGUGACCGAACAGAAACCGAA-CAAGUG-UUUGGAUUCCAAG----AACCGAAAGCCAAAAGACA .((((((((((((.........)))))))))))).....(((.(((((-(....)-))))).)))....----...(....).......... ( -23.40, z-score = -3.07, R) >dp4.chrXL_group3a 362694 73 + 2690836 GGGCUAUAAGUAGCCAAGAAAUUGGCUUG-GACCAGACAGAAGUCGAAGCGGAACGAGUGAGAUCCAAGAG--AAC---------------- .(((((....))))).........((((.-(((.........))).))))(((.(......).))).....--...---------------- ( -18.50, z-score = -2.36, R) >droPer1.super_11 2350994 73 - 2846995 GGGCUAUAAGUAGCCAAGAAAUUGGCUUG-GACCAGACAGAAGUCGAAGCGGAACGAGUGAGAUCCAAGAG--AAC---------------- .(((((....))))).........((((.-(((.........))).))))(((.(......).))).....--...---------------- ( -18.50, z-score = -2.36, R) >consensus GGGUUAUAAGUAGCCAGACCAUCUGCUUGUGACCGAACAGAAGCCGAA_CAAGAGUUUUGGACUCCAAG_A__AACCGAAAGCCAAAAGACA .((((((((((((.........)))))))))))).....((..(((((........)))))..))........................... (-13.02 = -13.60 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:13:51 2011