| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,131,001 – 4,131,073 |
| Length | 72 |
| Max. P | 0.954487 |
| Location | 4,131,001 – 4,131,073 |
|---|---|
| Length | 72 |
| Sequences | 5 |
| Columns | 73 |
| Reading direction | reverse |
| Mean pairwise identity | 77.78 |
| Shannon entropy | 0.36870 |
| G+C content | 0.42350 |
| Mean single sequence MFE | -18.00 |
| Consensus MFE | -10.24 |
| Energy contribution | -11.24 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.47 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.61 |
| SVM RNA-class probability | 0.954487 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4131001 72 - 22422827 ACUUUAGAUUCAGACUUCGGACCCUUCACAAUGAGGGGUCAUCUCAAGAGCAAAAUCUG-UUCACCAUAACAA ...................((((((((.....)))))))).......(((((.....))-))).......... ( -18.60, z-score = -2.60, R) >droEre2.scaffold_4690 1506172 59 - 18748788 -------------ACCUCGGACCCUUCACAAUGAGGGGUCAUUUCAAGAGCAGAAUCUG-UUCUCCAUAACAA -------------......((((((((.....))))))))......(((((((...)))-))))......... ( -20.20, z-score = -3.50, R) >droYak2.chrX 17464229 59 + 21770863 -------------ACUUUGGACCCUUCACAAUGAGGGGUCACUUCAAGAGCAGAAUCUG-UUCUCCAUGACAA -------------......((((((((.....))))))))...((((((((((...)))-))))...)))... ( -20.80, z-score = -2.80, R) >droSec1.super_4 3578253 73 + 6179234 ACUUUAGAUUCAGGCUUUGGACCCUUCACAAUGAGGGGUCAUCUCAAGAGCAGAAUCUGUUUCACCAUAACCA ....(((((((..(((((.((((((((.....))))))))......))))).))))))).............. ( -25.30, z-score = -3.75, R) >droSim1.chrX 3097517 72 - 17042790 ACUUUAGAUUCAGAGUUAAACCCCUUCACAAUNAGGNNUCAUCUCAAGAGCAGAAUCUN-UUCACCAUAACAA .....((((((...........(((........))).....((....))...)))))).-............. ( -5.10, z-score = 0.32, R) >consensus ACUUUAGAUUCAGACUUCGGACCCUUCACAAUGAGGGGUCAUCUCAAGAGCAGAAUCUG_UUCACCAUAACAA ...................((((((((.....))))))))......(((......)))............... (-10.24 = -11.24 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:13:50 2011