| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,100,483 – 4,100,587 |
| Length | 104 |
| Max. P | 0.919656 |
| Location | 4,100,483 – 4,100,587 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 82.24 |
| Shannon entropy | 0.33538 |
| G+C content | 0.48697 |
| Mean single sequence MFE | -30.62 |
| Consensus MFE | -18.56 |
| Energy contribution | -18.82 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.27 |
| SVM RNA-class probability | 0.919656 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4100483 104 - 22422827 AUUGGGCAACAAAAACGUGUCAAAAAACCUGACACCAGUCGCUCGUAAAAGUGACGAAAUGGGGCUUAAGUGCCACCGCCCA----GUUUCUCCGCCCAUUGUCGUUU ..(((((.........((((((.......))))))..((((((......))))))(((((.((((............)))).----)))))...)))))......... ( -34.10, z-score = -2.97, R) >droAna3.scaffold_13117 273885 100 + 5790199 AUUGAGCAACACGA--GGGCC-AGAAGUGCGACACCAGUCGCUCGUAAAAAUGACGAAAUAAGUGCCCAGUUUCUCCAAUU-----CUCUGAUUCUCCAGUGACAUUU ...(((.(((....--(((((-......(((((....)))))((((.......)))).....).)))).))).)))....(-----(.(((......))).))..... ( -23.60, z-score = -0.89, R) >droEre2.scaffold_4690 1470746 107 - 18748788 AUUGGGCAACAAAAACGUGUC-AAAAAGCUGACACCAGUCGUUCGUAAAAGUGAUGAAAUGCGGCUUAAGUGCCACCGCCCAGUUUGUUUCUCCGCCCAUCGGCGUUU (((((((.........(((((-(......))))))..((..(((((.......)))))..))(((......)))...))))))).........((((....))))... ( -31.50, z-score = -1.72, R) >droYak2.chrX 17433638 103 + 21770863 GUUGGGCAACAAAAUCGUGUC-AAAAACCUGACACCAGUCGCUCGUAAAAGUGAUGAAAUGCGGCUUAAAUGCCACCACCCA----GUUUCUCCGCCCAUCGUCGUUU (.(((((.......(((((((-(......))))))..((((((......)))))))).....(((......)))........----........))))).)....... ( -27.90, z-score = -2.50, R) >droSec1.super_4 3548590 104 + 6179234 AUUGGGCAACAAAAACGUGUCAAAAAACCAGACACCAGUCGCUCGUAAAAGUGACGAAAUGGGGCUUAAGUGCCACCGCCCA----GUUUCUCCGCCCAUCGUCGUUU ..(((((.........(((((.........)))))..((((((......))))))(((((.((((............)))).----)))))...)))))......... ( -32.50, z-score = -2.69, R) >droSim1.chrX 3064260 104 - 17042790 AUUGGGCAACAAAAACGUGUCAAAAAACCUGACACCAGUCGCUCGUAAAAGUGACGAAAUGGGGCUUAAGUGCCACCGCCCA----GUUUCUCCGCCCAUCGUCGUUU ..(((((.........((((((.......))))))..((((((......))))))(((((.((((............)))).----)))))...)))))......... ( -34.10, z-score = -3.08, R) >consensus AUUGGGCAACAAAAACGUGUC_AAAAACCUGACACCAGUCGCUCGUAAAAGUGACGAAAUGGGGCUUAAGUGCCACCGCCCA____GUUUCUCCGCCCAUCGUCGUUU ..(((((.........(((((.........)))))..((((((......)))))).......(((......)))....................)))))......... (-18.56 = -18.82 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:13:48 2011